PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G22690.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 344aa MW: 35801.7 Da PI: 9.9741

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G22690.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.2	6.5e-07	243	285	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+ L++e+ l+ + +l +e+ OMERI06G22690.4 243 RPRKKMRLPEIQQLVRSLTVENDGLREEMVALQRACTALSKEN 285 89***********************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-4	243	281	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MTAANAEACA VAAAADIICS LRGADLAGWT PPWGTAAAKG KEVVVEGEME EEELAWPTVA 60 RGKRSRSSRR RSPSGSGSAA TKGRWARGSP ASPLDYSGGS GSGSAASTSG GEDGAFCSPP 120 PPPPVVTAAA ATTPTAAPTP SPAKRVCLVR LTPTLRRGAA AAIHKGRWVP VRLPLPSLQP 180 RAAACRFCPI CPFDSSQTSG GNPVISPALI LDLTSSIAFV AVGPAGRRQL ILPTPTPRPA 240 GQRPRKKMRL PEIQQLVRSL TVENDGLREE MVALQRACTA LSKENCKLET RLEKSSKRNG 300 TKSEGQQARP QPDEPAAKQE SQNGFVLPDL NLPVEDMAAD GSAP

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MTAANAEACA VAAAADIICS LRGADLAGWT PPWGTAAAKG KEVVVEGEME EEELAWPTVA  60
RGKRSRSSRR RSPSGSGSAA TKGRWARGSP ASPLDYSGGS GSGSAASTSG GEDGAFCSPP  120
PPPPVVTAAA ATTPTAAPTP SPAKRVCLVR LTPTLRRGAA AAIHKGRWVP VRLPLPSLQP  180
RAAACRFCPI CPFDSSQTSG GNPVISPALI LDLTSSIAFV AVGPAGRRQL ILPTPTPRPA  240
GQRPRKKMRL PEIQQLVRSL TVENDGLREE MVALQRACTA LSKENCKLET RLEKSSKRNG  300
TKSEGQQARP QPDEPAAKQE SQNGFVLPDL NLPVEDMAAD GSAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	248	RPRKKMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644355.1	5e-77	uncharacterized protein LOC4341662
TrEMBL	A0A0E0E4D4	0.0	A0A0E0E4D4_9ORYZ; Uncharacterized protein
STRING	OMERI06G21070.1	1e-152	(Oryza meridionalis)