PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G21940.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 980aa MW: 96130 Da PI: 5.2729

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G21940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.8e-10	123	174	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge OMERI06G21940.1 123 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 174 69******.8*****95....258**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.0E-4	123	174	IPR001471	AP2/ERF domain
CDD	cd00018	3.34E-18	123	180	No hit	No description
PROSITE profile	PS51032	17.701	124	181	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-21	124	181	IPR001471	AP2/ERF domain
SMART	SM00380	7.0E-18	124	187	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-14	124	181	IPR016177	DNA-binding domain
PRINTS	PR01217	1.9E-9	279	291	No hit	No description
PRINTS	PR01217	1.9E-9	299	315	No hit	No description
PRINTS	PR01217	1.9E-9	368	385	No hit	No description
PRINTS	PR01217	1.9E-9	423	448	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAG GGGGGFLLSP GERERLRAGS 60 GLELVIVPVV EGDQVVSSSA SASEEVLVSP LVEGEVRVVP AVERRRWRRQ AAAEEWEEID 120 PETKYRGVRV RFGTRYVAEI HNPTGAGRLW LGTFDTAEQG AWAYDAAARV LRGEAAATNF 180 GDPAPAPSPL SAEMRSMLAF FDGARARRER VVEERGAAAA AAEASEAPAP LLLLPAPSPS 240 SDVSPVTVQV AAPPSSSDAA PVPATTLSDA SPVIVQVPVP PSSDATPVPA PTSSDASPVP 300 VQVPAPPSSD VAPVPVPVQV PAPTSSGSDE AAFVGGRGHG RGAGAGVGGG RGLGRGGGGG 360 RGRGGKRAPT TAVTVVAPPP PVPTPAAGAA APTLAPASAA AHAPAPSVEP DALVSPASSA 420 IAPAYAAPAP APAPPALEAL ARPPPAAPAS LSASGGERGC IAIANAAVAG RGRGRGSGAK 480 RAPTAVTMGA PPPPARTPAA APAKALVSAP APAPSAVISP VLAASASASA AFAPAPAANE 540 AIPQPLPLPA AASAAAAPAA ERKRKLPTAS ILSASGDRGR VADAAVAGGS RGRGRGCGLT 600 PAVVTVGAPP PPSAAPAPVP ASAPSLEPNA IIPPVSSTLA PGASVAAAAA PALAPPAAAP 660 IAIPTPPPTV AAAAAAPKPK KRKVLTASTL TGSGGPGRGR GRVAEETFAG RGRGVWSGRG 720 CGRGRGRIPT AVTVGTPSPS APTPASASAT APLIQSNAVI SSVPPTLAAS SAAASPPVPV 780 ITELTTAAAA PLPEKPVLTA HDVVMATLFP NDVFSYTAGP SHAPPPPPPV ASGSFFQEVI 840 PPGGVPTNYA IHEAPDFDPN VFFADVPDGE QDESVLLSST STLLDVDSSL SLAADDAASS 900 AQAAVDVASS SAQAAIDVPS SSVLAVVDVP SSSAQAAIDV PSSSAQVATD VASSLTQGAA 960 GNERPIVFDF DLNEPAFNYE

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAG GGGGGFLLSP GERERLRAGS  60
GLELVIVPVV EGDQVVSSSA SASEEVLVSP LVEGEVRVVP AVERRRWRRQ AAAEEWEEID  120
PETKYRGVRV RFGTRYVAEI HNPTGAGRLW LGTFDTAEQG AWAYDAAARV LRGEAAATNF  180
GDPAPAPSPL SAEMRSMLAF FDGARARRER VVEERGAAAA AAEASEAPAP LLLLPAPSPS  240
SDVSPVTVQV AAPPSSSDAA PVPATTLSDA SPVIVQVPVP PSSDATPVPA PTSSDASPVP  300
VQVPAPPSSD VAPVPVPVQV PAPTSSGSDE AAFVGGRGHG RGAGAGVGGG RGLGRGGGGG  360
RGRGGKRAPT TAVTVVAPPP PVPTPAAGAA APTLAPASAA AHAPAPSVEP DALVSPASSA  420
IAPAYAAPAP APAPPALEAL ARPPPAAPAS LSASGGERGC IAIANAAVAG RGRGRGSGAK  480
RAPTAVTMGA PPPPARTPAA APAKALVSAP APAPSAVISP VLAASASASA AFAPAPAANE  540
AIPQPLPLPA AASAAAAPAA ERKRKLPTAS ILSASGDRGR VADAAVAGGS RGRGRGCGLT  600
PAVVTVGAPP PPSAAPAPVP ASAPSLEPNA IIPPVSSTLA PGASVAAAAA PALAPPAAAP  660
IAIPTPPPTV AAAAAAPKPK KRKVLTASTL TGSGGPGRGR GRVAEETFAG RGRGVWSGRG  720
CGRGRGRIPT AVTVGTPSPS APTPASASAT APLIQSNAVI SSVPPTLAAS SAAASPPVPV  780
ITELTTAAAA PLPEKPVLTA HDVVMATLFP NDVFSYTAGP SHAPPPPPPV ASGSFFQEVI  840
PPGGVPTNYA IHEAPDFDPN VFFADVPDGE QDESVLLSST STLLDVDSSL SLAADDAASS  900
AQAAVDVASS SAQAAIDVPS SSVLAVVDVP SSSAQAAIDV PSSSAQVATD VASSLTQGAA  960
GNERPIVFDF DLNEPAFNYE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005386	0.0	AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0E423	0.0	A0A0E0E423_9ORYZ; Uncharacterized protein
STRING	OMERI06G20370.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13787	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28360.1	7e-12	ERF domain protein 12