PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G21500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 34321.5 Da    PI: 8.7023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G21500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-09155202455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  OMERI06G21500.1 155 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 202
                      8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.92E-592102No hitNo description
CDDcd000831.47E-9149206No hitNo description
SuperFamilySSF474592.75E-15149220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF1014473.92E-5282301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRHHSPPPPP DLSSAVGEIH PPLASAARSS SNGGGSGGSF TALLGLPTSQ AMELLQLPTA  60
ASAPPPPPAF PADPHLVDRA ARFSAFASPS PPSPPPPPPP PPSSSSKRKP DPASKGKAAK  120
KGKTAASGED GGDGGEDEKP AYVHVRARRG QATDSHSLAE RARREKINAR MELLKELVPG  180
CSKVSGTALV LDEIINHVQS LQRQVEYLSM RLAAVNPRVD FGGLDNFLTT ECGRITGLNY  240
KNGMDLEQVT WPDMGVHGAR NLMQLQQQFW HGDLAHPLQP PSQWEKRTDT NPPVFSNSSS  300
SLFGYDLASS GAPAQTGNKL KTEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709700.0AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641463.11e-169transcription factor bHLH48 isoform X2
SwissprotQ8VZ022e-62BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0E0E3W00.0A0A0E0E3W0_9ORYZ; Uncharacterized protein
STRINGOMERI06G19950.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]