PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G21070.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 602aa MW: 66532.1 Da PI: 5.2967 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 169 | 216 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l OMERI06G21070.3 169 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 216 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.3e-13 | 222 | 265 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ OMERI06G21070.3 222 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 265 79********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.639 | 164 | 220 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-30 | 166 | 263 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 168 | 218 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-17 | 169 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 170 | 223 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.20E-12 | 171 | 216 | No hit | No description |
SMART | SM00717 | 1.9E-12 | 221 | 269 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.24 | 221 | 271 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.0E-12 | 222 | 265 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.71E-9 | 224 | 265 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 224 | 269 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MQYCKPRLHR WIVLCMQTLV GPPRDGSPFR PRTRTIVIGG RLLLASSSLL RLVYYSTSLS 60 AAVAAAAAAD SLVSTPVSTL PRWRSTRRLM RMEGSSPMEE DEPAAMLAGS QGESPAMLYP 120 SGDGDRDGDD DEGDASGGEE EQGGVARAGV RRRGGGVRVR VRGRIPLKKG PWTPDEDKRL 180 REYVEAHGEG NWNRVQRNAG LNRCGKSCRL RWANHLKPDL KKGPFSKEEE EMIIKLHLWL 240 GNKWAKMANS LPGRTDNEIK NFWNTRCKRI QRTGEPLYPK EFNHFKLTDL EVMNCESPDE 300 SRAKKRTNEV LQGNGQSYKE VFFDNLDYSR PENYIRPNCV TPNSLPVDAT SPFGSAIATQ 360 DQSVPFGSAI VSGHPILDGN FSTSGTIQRP MNVELPSLQY PNYDFNNNNA WSYHDPLGHP 420 IDQVDFGSLR SEYLSPNNNG LLDALVHGGH GQGELANSQG SFDACFPRVQ CNQVIQSNAF 480 SLSSSFPIIG DDLLENSCHA FVGINNNASS LFLDSQPPPL VDPTFWRHDV SLEPNLPVYC 540 QFNEELPPSN EQFAKDADDA FGHGGLSDET NLAAAGQGDE HDLENPWASM PGACDIPDFP 600 SE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 167 | 269 | 5 | 106 | B-MYB |
1h8a_C | 2e-27 | 167 | 269 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB212075 | 0.0 | AB212075.1 Oryza sativa Japonica Group mRNA for GAMYB-like1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641123.1 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | A0A0E0E3P6 | 0.0 | A0A0E0E3P6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G20450.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12902 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 2e-54 | myb domain protein 101 |