PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G20820.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 487aa    MW: 53641.3 Da    PI: 5.709
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G20820.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-09248294652
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +++k qle+Le+++ +++ p+ +++  + + ++L+ + +  WF  rR
  OMERI06G20820.3 248 RLKKVQLETLERVYSRTKRPTNTMISSIVQVTNLPRKTIVKWFEDRR 294
                      67899*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000865.30E-7243294No hitNo description
SuperFamilySSF466895.13E-9246300IPR009057Homeodomain-like
SMARTSM003890.0013246304IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-9247296IPR009057Homeodomain-like
PfamPF000466.0E-7248294IPR001356Homeobox domain
PROSITE profilePS500719.41253300IPR001356Homeobox domain
PfamPF156978.3E-43343475IPR031421Protein of unknown function DUF4666
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAAMVGAPLA VAAAAAAPGA RVFLARPLLR RSPRGVACAL RRRPSKYKNK IQNEEVVAED  60
DIGGGGEDDD DALEALFKQL EEDLKNDDLS VEDDDDGISE EDMARFEQEL AEAIGDIADA  120
DESAEGSSLG SEAYGNDEKT DEIKRPELKN WQLKRLARAL KIGRRKTSIK NLAGEIGLDR  180
TLVIELLRNP PPKLLFMSDS LPDEDPSKPE IKEIEPCPVV DNADITETKP QTELPVHVMC  240
AEWSSQKRLK KVQLETLERV YSRTKRPTNT MISSIVQVTN LPRKTIVKWF EDRREHDGME  300
KFRSSSEGNH VETGEGGSIW GPARLQHSDS ERGVVVVLVV QMMAGLQRSA TTFRRSGSSG  360
LVWDERFLTE DAEAAKAGDG DGGGGTEEPQ PELRHSKSVG SIGMMRRVAA DDRDDSKKTT  420
KQQRKKKKKD GQKEDDNRSQ QVFRTKDIAP DVDPPSPRVS GCILCSIFSG SGSSAAAKSR  480
RAKPRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423429RKKKKKD
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713300.0AK071330.1 Oryza sativa Japonica Group cDNA clone:J023089G15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643619.11e-176protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V51e-59OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0E0E3L10.0A0A0E0E3L1_9ORYZ; Uncharacterized protein
STRINGOMERI06G19260.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-55overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]