PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G20820.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 489aa    MW: 53822.5 Da    PI: 5.6841
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G20820.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-09250296652
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +++k qle+Le+++ +++ p+ +++  + + ++L+ + +  WF  rR
  OMERI06G20820.2 250 RLKKVQLETLERVYSRTKRPTNTMISSIVQVTNLPRKTIVKWFEDRR 296
                      67899*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000865.03E-7245296No hitNo description
SMARTSM003890.0013248306IPR001356Homeobox domain
SuperFamilySSF466895.13E-9248302IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-9249298IPR009057Homeodomain-like
PfamPF000466.0E-7250296IPR001356Homeobox domain
PROSITE profilePS500719.41255302IPR001356Homeobox domain
PfamPF156978.4E-43345477IPR031421Protein of unknown function DUF4666
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAAMVGAPLA VAVAAAAAAP GARVFLARPL LRHSPRSVAC ALRRRPSKYK NKIQNEEVVA  60
EDDIGGGGED DDDALEALFK QLEEDLKNDD LSVEDDDDGI SEEDMARFEQ ELAEAIGDIA  120
DADESAEGSS LGSEAYGNDE KTDEIKRPEL KNWQLKRLAR ALKIGRRKTS IKNLAGEIGL  180
DRTLVIELLR NPPPKLLFMS DSLPDEDPSK PEIKEIEPCP VVDNADITET KPQTELPVHV  240
MCAEWSSQKR LKKVQLETLE RVYSRTKRPT NTMISSIVQV TNLPRKTIVK WFEDRREHDG  300
MEKFRSSSEG NHVETGEGGS IWGPARLQHS DSERGVVVVL VVQMMAGLQR SATTFRRSGS  360
SGLVWDERFL TEDAEAAKAG DGDGGGGTEE PQPELRHSKS VGSIGMMRRV AADDRDDSKK  420
TTKQQRKKKK KDGQKEDDNR SQQVFRTKDI APDVDPPSPR VSGCILCSIF SGSGSSAAAK  480
SRRAKPRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425431RKKKKKD
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713300.0AK071330.1 Oryza sativa Japonica Group cDNA clone:J023089G15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656208.11e-174PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V51e-59OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0E0E3L00.0A0A0E0E3L0_9ORYZ; Uncharacterized protein
STRINGOMERI06G19260.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-55overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]