PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G19380.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 425aa    MW: 44959.4 Da    PI: 9.8462
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G19380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.25.4e-09203223121
             GATA   1 CsnCgttkTplWRrgpdgnkt 21 
                      Cs C+ttkTplWR+gp g+k 
  OMERI06G19380.1 203 CSDCNTTKTPLWRSGPCGPKV 223
                      *****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-5197221No hitNo description
SMARTSM004018.2E-5197284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.8E-8200216IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.077201220IPR000679Zinc finger, GATA-type
CDDcd002023.51E-8202274No hitNo description
PfamPF003201.9E-6203223IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.8E-8252271IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSTIYMSQLS AALPLMEGKH HHHHQDHHQG HFQAFSLQPK DPPVLFPFVI SRRSSSSSPS  60
DSTTLSYGSD HHLTQQQQHQ HQAMLEPQHM IGGSSAGIFA TPFPTVKSIR DDMIERSQFD  120
PYDTEKLQAS CGLAKVVAGG KWSAVPAAKM KITRKMGEPS SGVTGGAATT VAPKKPRRRP  180
AQAYEDHGHG GAMGQAFGVI RVCSDCNTTK TPLWRSGPCG PKVLIYLFVS LMAMAPWMLL  240
LAYTAAVSHF HGCSMVQSLC NACGIRQRKA RRAMMASGLP ASPNAAGPKA AAHSGAAAVA  300
AAQPKVKKEK RADVDRSSLP FKKRCKAVQV EDHQTPPAAT NAAAAAAMEE TAESATVAPP  360
PAPTTRGGTL VDSIGLSWSK THAAATASCS FRPSPVAPGF AAAVQDEITD AAMLLMTLSC  420
GLVRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179PKKPRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047290.0AP004729.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22.
GenBankAP0054600.0AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641328.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_015641329.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_025882362.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
TrEMBLA0A0E0E3250.0A0A0E0E325_9ORYZ; Uncharacterized protein
STRINGONIVA06G22870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-13GATA family protein