PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G18980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 549aa    MW: 56006.8 Da    PI: 6.9252
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G18980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-084725091954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  OMERI06G18980.1 472 FENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 509
                      7766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075263.8E-12272403IPR006563POX domain
PROSITE profilePS5007111.791450513IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-25452525IPR009057Homeodomain-like
CDDcd000861.18E-11453514No hitNo description
SuperFamilySSF466892.05E-15453522IPR009057Homeodomain-like
SMARTSM003895.4E-7453517IPR001356Homeobox domain
PfamPF059201.4E-15470509IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSTSSNPSYH QLGLDAISCC FVAGGGAGGA EAAAPFFGFG FGDVDGEFLV ASPVAAVGDE  60
LACAVPLRRP QGSVSEEEVN AAAVAAAAAG AESCSTVHSV LGSVEFGCGT SSGVTIAQAS  120
RMGRLAGEAP CGDASGGGWI YGGSGIAPVH GAYCLSGFSS GAGAGFLSPF AASSVAAAAP  180
AASELSLRLG ATKCSSPSTI ANALSEVSCS GLTHVSSGGG LGYHQAAAAG GGAALFHLTH  240
GDGATAAAAG ELRQAYHSRV APHFSQVVPR SAVFAHVAQE LLNGFVACLL QDVAADAASG  300
VDGGEASPAL SSGFSARITT PPTEDASPGS GGARWAAEAQ RLRKLLQLVD EKCSQCVAEM  360
QSTAARFNSM VRSTGGGGGG GGLMAAFAGR AVAAAYRKVR RRVMGQLMAA ATARSSSSSA  420
AAAALEEKER SWESSFIQKH WAMQQLRRGD QQWRPQRGLP EKSVAVLKAW MFENFLRPYP  480
KDSEKDMLAA RSGLSRSQVS NWFINARVRL WKPMIEDMYE ELKKTSGGSD GAAEIEHLSS  540
KDVLSLERL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037140.0AP003714.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0656E03.
GenBankAP0037620.0AP003762.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0456F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641753.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_015641754.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_025882414.10.0BEL1-like homeodomain protein 1 isoform X1
TrEMBLA0A0E0E2W40.0A0A0E0E2W4_9ORYZ; Uncharacterized protein
STRINGOMERI06G17450.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-48homeobox gene 1