PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G18870.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 474aa MW: 51105.3 Da PI: 7.7864

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G18870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.4	5.2e-31	55	230	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kv+ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ OMERI06G18870.1 55 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaan 146 799**********.99*988856665543333333766646******.556667799**************88*** PP NAM 78 ................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l OMERI06G18870.1 147 tsggggggnasssssasaaavarhgqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 230 ***********************9998755789*******9.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-35	49	139	IPR003441	NAC domain
PROSITE profile	PS51005	26.582	55	249	IPR003441	NAC domain
Pfam	PF02365	8.4E-15	56	230	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-35	184	249	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDGVVAEEAG GGGGGGGHRL LIGSRIEEHR KYMSEESCCP RCGHKIDRKL DWVGLPAGVK 60 FDPTDQELIE HLEAKVRPGG EAAAHPLIDE FIPTIEGEDG ICYTHPEKLP GVSKDGLSRH 120 FFHRPSKAYT TGTRKRRKIQ PPAAANTSGG GGGGNASSSS SASAAAVARH GQQQQQQQRS 180 ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE 240 LVVSKIFYQT QPRQCAAADA AAAASVVDRR TTSGRDRAAA AAAAAAAAAA PMASANVNVA 300 AFHGGAAGID EFSFAQFRSS FEEAGMGASS SDHQSAMVDQ RRQQQQHDDD EHDHRRGGGG 360 HHYVGQQQSV AATFHVVSSP ADPLARLMSP PPAHQGTVML RQPEPPYNYH HQEDERPHQP 420 RKFDGRSTSG SGLEEVIMGC TSRRSKGGET SGGKDGTEWQ YPSFWPSDSQ DHHG

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDGVVAEEAG GGGGGGGHRL LIGSRIEEHR KYMSEESCCP RCGHKIDRKL DWVGLPAGVK  60
FDPTDQELIE HLEAKVRPGG EAAAHPLIDE FIPTIEGEDG ICYTHPEKLP GVSKDGLSRH  120
FFHRPSKAYT TGTRKRRKIQ PPAAANTSGG GGGGNASSSS SASAAAVARH GQQQQQQQRS  180
ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE  240
LVVSKIFYQT QPRQCAAADA AAAASVVDRR TTSGRDRAAA AAAAAAAAAA PMASANVNVA  300
AFHGGAAGID EFSFAQFRSS FEEAGMGASS SDHQSAMVDQ RRQQQQHDDD EHDHRRGGGG  360
HHYVGQQQSV AATFHVVSSP ADPLARLMSP PPAHQGTVML RQPEPPYNYH HQEDERPHQP  420
RKFDGRSTSG SGLEEVIMGC TSRRSKGGET SGGKDGTEWQ YPSFWPSDSQ DHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003713	0.0	AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641895.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-119	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0E0E2V3	0.0	A0A0E0E2V3_9ORYZ; Uncharacterized protein
STRING	OMERI06G17360.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-101	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]