PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G17270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 198aa    MW: 21346.5 Da    PI: 10.9172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G17270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.42.5e-202066349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie k +rqvtfskRr g++KKA+E+S+L +a va++ fs+ g+++ +
  OMERI06G17270.1 20 IEGKEKRQVTFSKRRRGLFKKASEISTLSGASVAIVAFSKAGNVFAF 66
                     8999***************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-231069IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-231079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.4411070IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-161232IPR002100Transcription factor, MADS-box
PfamPF003198.7E-212066IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI EGKEKRQVTF SKRRRGLFKK ASEISTLSGA SVAIVAFSKA  60
GNVFAFGSPS VNAVLRRHVV AGPSTSTPHA HAGGVVFADD DDDNPEVLNA LKRATDAATA  120
EVAAEDARQS GVEGMIMEAM EAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVVRRR  180
SGAKPPPPPR RCKKKLLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.11e-101agamous-like MADS-box protein AGL61
TrEMBLA0A0E0E2A91e-141A0A0E0E2A9_9ORYZ; Uncharacterized protein
STRINGOMERI06G15960.11e-142(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2047878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-23AGAMOUS-like 62