PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G16500.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 350aa    MW: 38191.4 Da    PI: 7.2227
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G16500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.5e-091375656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  OMERI06G16500.2 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
                     69*************776999***************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-81280IPR009057Homeodomain-like
SuperFamilySSF466896.42E-111278IPR009057Homeodomain-like
PfamPF000461.8E-61375IPR001356Homeobox domain
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
PfamPF167191.3E-21126207IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP  60
KQVWNWFQNR RYSHRSRSSR GPPTLMQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG  120
SLESGQVEFE AKSARDGAWY DVAAFLSHRL FESGDPEVRV RFSGFGAEED EWINVRKCVR  180
QRSLPCESTE CVAVLPGDLI LCFQAKSRLC ISMLVSLMLK GVDMMYEGVA VDFLFATIMI  240
TLRLQILHAA RAAGMAKEAV VDLVSHNDKS SAEQKPPKQH KMMDVNTDEV TMVSNQDQEE  300
PTGKPAATLP AAPVKTLNDS ASASDVQMGV AQAAPKVESS DEVEDKMKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-27124206183SHH1 SAWADEE
4iur_B2e-27124206183SHH1 SAWADEE
4iut_A2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-27124206183SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1042820.0AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-78SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0E0E2150.0A0A0E0E215_9ORYZ; Uncharacterized protein
STRINGOS06T0485100-030.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.35e-71sequence-specific DNA binding transcription factors;sequence-specific DNA binding