PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G16280.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 144aa MW: 15004 Da PI: 6.0044 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 29.7 | 8.1e-10 | 33 | 84 | 281 | 332 |
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 ++ Er+ll++e + vvacega+ +erhe++++W +++e+ +++v ls++ OMERI06G16280.6 33 QAPREERVLLREETRGVVACEGAKLVERHERARHWAAWMEADDMEQVGLSYS 84 555679*******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.8E-7 | 33 | 84 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0016868 | Molecular Function | intramolecular transferase activity, phosphotransferases |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MDHVRNSALA ALEGGVAGNK SVAGAGAAPG GAQAPREERV LLREETRGVV ACEGAKLVER 60 HERARHWAAW MEADDMEQVG LSYSGAMHGG EEAATELQVG GAVRPWLLIL LAHEAALRRL 120 RVAAGAVAPP PRSVIGEPAS CSID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065281 | 0.0 | AK065281.1 Oryza sativa Japonica Group cDNA clone:J013002M01, full insert sequence. | |||
GenBank | AP003520 | 0.0 | AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10. | |||
GenBank | AP004734 | 0.0 | AP004734.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0A9Q0 | 4e-95 | A0A0E0A9Q0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0E1Z0 | 4e-95 | A0A0E0E1Z0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GRC1 | 4e-95 | A0A0E0GRC1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PXY4 | 4e-95 | A0A0E0PXY4_ORYRU; Uncharacterized protein | ||||
STRING | ONIVA03G29410.2 | 7e-96 | (Oryza nivara) |