PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G13990.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 354aa    MW: 38278 Da    PI: 4.7116
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G13990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.7e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  OMERI06G13990.1  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6*****************************657888889876 PP
2zf-B_box22.42.5e-074789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+++ ++++   C   +  lC++C  ++H+       H++++
  OMERI06G13990.1 47 LCDRCVSQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
                     7*****************************6688899999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
CDDcd000215.69E-8447No hitNo description
PROSITE profilePS501198.6744390IPR000315B-box-type zinc finger
CDDcd000213.65E-64790No hitNo description
SMARTSM003360.344890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVSQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQGI AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL  180
PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEIPSG NSDEQPKLMQ PVTSNAVSAD SGMSIPGAKV LEITKIVGYH  300
QYSLWVSLLG ILLALRGHLL ELPETMLSHD TRRRRREENL TRKSGMHLAR LGQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0988650.0AK098865.1 Oryza sativa Japonica Group cDNA clone:J013001A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694313.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X3
TrEMBLA0A0E0E1350.0A0A0E0E135_9ORYZ; Uncharacterized protein
STRINGOGLUM06G12660.20.0(Oryza glumipatula)
STRINGORUFI06G12310.20.0(Oryza rufipogon)
STRINGOS06T0298200-010.0(Oryza sativa)
STRINGONIVA06G13380.10.0(Oryza nivara)
STRINGOBART06G11710.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-75B-box type zinc finger protein with CCT domain