PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI06G13840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 23636.9 Da PI: 10.0891 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.1 | 1.5e-31 | 13 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWk.atgkdke 91 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ + yfF+ r + g+r++ +++ g Wk a g+dk+ OMERI06G13840.1 13 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPASGGGrGRRQQVTASGGCWKpAGGRDKP 103 79****************************.8899998***********43..4567889999999887751555555677899**66678*** PP NAM 92 vlsk...kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 v+++ +++lvg+kk +vf +g+a + Wvmhey+l OMERI06G13840.1 104 VVVArcgGSHLVGVKKGMVFVprQGKAAAAGGGCWVMHEYSL 145 99988988999**********98899999999********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-41 | 9 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.832 | 13 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-20 | 14 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MEPVVVRHGG VVLPPGFRFH PTDEELVVQY LRRKAFGLPL PAAVIPDLHN LFKLDPWDIP 60 GASSDGDKYF FAVRPASGGG RGRRQQVTAS GGCWKPAGGR DKPVVVARCG GSHLVGVKKG 120 MVFVPRQGKA AAAGGGCWVM HEYSLALPMH KKGCLADAGE WVVCRIFQRS SSGSRSPRRP 180 DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-30 | 13 | 175 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT841566 | 0.0 | CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence. | |||
GenBank | KJ690249 | 0.0 | KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650414.1 | 1e-117 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A0E0E105 | 1e-159 | A0A0E0E105_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G12850.1 | 1e-160 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-39 | NAC domain containing protein 83 |