PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G11370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 1117aa    MW: 119743 Da    PI: 8.2027
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G11370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.22.7e-06387404118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H Cq +CH+G C++C
  OMERI06G11370.1 387 CGNHACQDICHPGRCGEC 404
                      ****************** PP

2zf-NF-X122.72.1e-07445462118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C+ +CHeG+CppC
  OMERI06G11370.1 445 CGVHRCKVTCHEGDCPPC 462
                      ****************** PP

3zf-NF-X116.42e-05540558119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H Cq lCH G CppC 
  OMERI06G11370.1 540 CGQHGCQLLCHSGHCPPCL 558
                      ******************6 PP

4zf-NF-X120.11.4e-06650666117
         zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                      CG+H C+++CH+ pC+p
  OMERI06G11370.1 650 CGMHACNRTCHPSPCDP 666
                      ***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.54E-7146215No hitNo description
PROSITE profilePS500169153212IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.391156210IPR001841Zinc finger, RING-type
PROSITE patternPS013590156209IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.29268286IPR000967Zinc finger, NF-X1-type
PfamPF014228.4270285IPR000967Zinc finger, NF-X1-type
CDDcd060087.46E-12313361No hitNo description
SMARTSM004380.0019323342IPR000967Zinc finger, NF-X1-type
PfamPF014220.017323340IPR000967Zinc finger, NF-X1-type
CDDcd060082.35E-7377420No hitNo description
SMARTSM004380.0018387406IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-4387404IPR000967Zinc finger, NF-X1-type
CDDcd060082.46E-13435483No hitNo description
SMARTSM004380.001445464IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-6445462IPR000967Zinc finger, NF-X1-type
PROSITE profilePS513648.879479534IPR017878TB domain
CDDcd060082.61E-8530582No hitNo description
SMARTSM004387.2E-4540559IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017540557IPR000967Zinc finger, NF-X1-type
SMARTSM004380.5597615IPR000967Zinc finger, NF-X1-type
PfamPF0142289597613IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0057650685IPR000967Zinc finger, NF-X1-type
PfamPF014226.0E-4650666IPR000967Zinc finger, NF-X1-type
PfamPF014229.1687713IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16694715IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MSSSDRRRGG NGGGGGPVAV PSSRAVWRPR STAPDIPPPP RAPAAAPAPD RIGPILPSPN  60
PASEDRPQQQ QRRPRRRNHG GGGQRRGPPQ ERPSAAPPPP PPQRQQHAAP APTRAAAPPP  120
ARVAATKAAA AAGGDGAVPQ LVQEIQDKLA RGAVECMICY DMVRRSAPVW SCGSCFSIFH  180
LPCIRKWARS PASAADASDP DSSWRCPGCQ SVHAVPAREL AYTCFCGRRR EPPNDLFLTP  240
HSCGEPCSKP LEKADPAVKG DDAAATRCPH LCVLQCHPGP CPPCKAFAPD RLCPCGKQTI  300
VRRCADRTTP VTCGQRCDRL LPCRRHRCEK VCHTGPCGDC NVLISARCFC GKKTETLLCG  360
EMELKGNLSE KDGVFSCSEA CSHMLSCGNH ACQDICHPGR CGECELMPGK VTACHCGKTR  420
LLEKRASCLD PIPTCDKVCD KKLPCGVHRC KVTCHEGDCP PCVVRVEQRC RCGSSGQMVE  480
CYKVLEEEFR CNKPCGRKKN CGRHRCSECC CALSKPLAQL EGGNWDPHLC QIPCGKKLRC  540
GQHGCQLLCH SGHCPPCLET IFNDLTCACG RTSIPPPLPC GTPTPSCPHQ CLVPQPCGHA  600
ATHQCHFGDC PPCVVPIMRE CIGGHVVLRN IPCGSKDIRC NQPCGKNRQC GMHACNRTCH  660
PSPCDPPPAN GDASSSTGGR ASCGQVCGAP RRECKHTCTA PCHPSSPCPD LRCEFPVTIA  720
CSCGRITATV PCGAGGTANG DNMFEVSIIQ KLPMPLQPVE SDGRRVPLGQ RKLSCDEDCA  780
KMERKRVLAE AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVMAIEE RCKFLVLGKT  840
RGNSSGNLKV HVFCHMTKDK RDAIRVIADR WKLSVQAAGW EPKRFITIHP TPKSKAPARI  900
LGSKPGVSVA ASHPFFDPLV DMDPRLVVAM LDLPRDADVS ALVLRFGGEC ELVWLNDKNA  960
VAVFNDPARA ATALRRLDYG SAYQGAAVFL PSSSAQPGNV WVAGQKDGVV ATKSSANPWK  1020
KATASEPDPS SGDWTGVLGQ APGSVWRRGG DTVAQVMGTS NRWNALESDV ATSSRPVEES  1080
KPAPRTDAGS SAGPSTAPPV SKMQPEVEVD DWEEACE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176RRPRRR
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055180.0AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0E0E0160.0A0A0E0E016_9ORYZ; Uncharacterized protein
STRINGOMERI06G10700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1