PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G11370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1117aa MW: 119743 Da PI: 8.2027 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 19.2 | 2.7e-06 | 387 | 404 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H Cq +CH+G C++C OMERI06G11370.1 387 CGNHACQDICHPGRCGEC 404 ****************** PP | |||||||
2 | zf-NF-X1 | 22.7 | 2.1e-07 | 445 | 462 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC OMERI06G11370.1 445 CGVHRCKVTCHEGDCPPC 462 ****************** PP | |||||||
3 | zf-NF-X1 | 16.4 | 2e-05 | 540 | 558 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC OMERI06G11370.1 540 CGQHGCQLLCHSGHCPPCL 558 ******************6 PP | |||||||
4 | zf-NF-X1 | 20.1 | 1.4e-06 | 650 | 666 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG+H C+++CH+ pC+p OMERI06G11370.1 650 CGMHACNRTCHPSPCDP 666 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 9.54E-7 | 146 | 215 | No hit | No description |
PROSITE profile | PS50016 | 9 | 153 | 212 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.391 | 156 | 210 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 156 | 209 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.29 | 268 | 286 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 270 | 285 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.46E-12 | 313 | 361 | No hit | No description |
SMART | SM00438 | 0.0019 | 323 | 342 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.017 | 323 | 340 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.35E-7 | 377 | 420 | No hit | No description |
SMART | SM00438 | 0.0018 | 387 | 406 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.8E-4 | 387 | 404 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.46E-13 | 435 | 483 | No hit | No description |
SMART | SM00438 | 0.001 | 445 | 464 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.6E-6 | 445 | 462 | IPR000967 | Zinc finger, NF-X1-type |
PROSITE profile | PS51364 | 8.879 | 479 | 534 | IPR017878 | TB domain |
CDD | cd06008 | 2.61E-8 | 530 | 582 | No hit | No description |
SMART | SM00438 | 7.2E-4 | 540 | 559 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0017 | 540 | 557 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.5 | 597 | 615 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 89 | 597 | 613 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0057 | 650 | 685 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.0E-4 | 650 | 666 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.1 | 687 | 713 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.16 | 694 | 715 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1117 aa Download sequence Send to blast |
MSSSDRRRGG NGGGGGPVAV PSSRAVWRPR STAPDIPPPP RAPAAAPAPD RIGPILPSPN 60 PASEDRPQQQ QRRPRRRNHG GGGQRRGPPQ ERPSAAPPPP PPQRQQHAAP APTRAAAPPP 120 ARVAATKAAA AAGGDGAVPQ LVQEIQDKLA RGAVECMICY DMVRRSAPVW SCGSCFSIFH 180 LPCIRKWARS PASAADASDP DSSWRCPGCQ SVHAVPAREL AYTCFCGRRR EPPNDLFLTP 240 HSCGEPCSKP LEKADPAVKG DDAAATRCPH LCVLQCHPGP CPPCKAFAPD RLCPCGKQTI 300 VRRCADRTTP VTCGQRCDRL LPCRRHRCEK VCHTGPCGDC NVLISARCFC GKKTETLLCG 360 EMELKGNLSE KDGVFSCSEA CSHMLSCGNH ACQDICHPGR CGECELMPGK VTACHCGKTR 420 LLEKRASCLD PIPTCDKVCD KKLPCGVHRC KVTCHEGDCP PCVVRVEQRC RCGSSGQMVE 480 CYKVLEEEFR CNKPCGRKKN CGRHRCSECC CALSKPLAQL EGGNWDPHLC QIPCGKKLRC 540 GQHGCQLLCH SGHCPPCLET IFNDLTCACG RTSIPPPLPC GTPTPSCPHQ CLVPQPCGHA 600 ATHQCHFGDC PPCVVPIMRE CIGGHVVLRN IPCGSKDIRC NQPCGKNRQC GMHACNRTCH 660 PSPCDPPPAN GDASSSTGGR ASCGQVCGAP RRECKHTCTA PCHPSSPCPD LRCEFPVTIA 720 CSCGRITATV PCGAGGTANG DNMFEVSIIQ KLPMPLQPVE SDGRRVPLGQ RKLSCDEDCA 780 KMERKRVLAE AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVMAIEE RCKFLVLGKT 840 RGNSSGNLKV HVFCHMTKDK RDAIRVIADR WKLSVQAAGW EPKRFITIHP TPKSKAPARI 900 LGSKPGVSVA ASHPFFDPLV DMDPRLVVAM LDLPRDADVS ALVLRFGGEC ELVWLNDKNA 960 VAVFNDPARA ATALRRLDYG SAYQGAAVFL PSSSAQPGNV WVAGQKDGVV ATKSSANPWK 1020 KATASEPDPS SGDWTGVLGQ APGSVWRRGG DTVAQVMGTS NRWNALESDV ATSSRPVEES 1080 KPAPRTDAGS SAGPSTAPPV SKMQPEVEVD DWEEACE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | RRPRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005518 | 0.0 | AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643844.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A0E0E016 | 0.0 | A0A0E0E016_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G10700.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |