PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G10800.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 317aa    MW: 35730.9 Da    PI: 8.8961
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G10800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.66.9e-2695175171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak+L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  OMERI06G10800.1  95 RKEKSLGLLTQNFVKLFLTMEIETISLDEAAKRLLGEghaanNMRTKVRRLYDIANVLSSLNLIEKtqqadSRKPAFRWLG 175
                      79****************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-2492176IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-3395175IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2196175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.54E-1397175IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MLVRRAKNRY TWIGFGGVPA ALAELKEMAL RAVSSVASPS LDETSAANVS DDEDDDKLDD  60
AEGDAESEKL SLSQSIDNPS DKPDEPPCKL RSEHRKEKSL GLLTQNFVKL FLTMEIETIS  120
LDEAAKRLLG EGHAANNMRT KVRRLYDIAN VLSSLNLIEK TQQADSRKPA FRWLGQAKRN  180
EGVTVALPPT KTLPNKRAFG TDLTNIDNKR GKLDSTTENR GKPTQDGGNL FKNLQRQLGQ  240
ENRSDFVYGP FHPAGARKQE HGNRTVQEKE RKSIQDWENL ASSFRPQYQN PGLNDLFGHY  300
MEAWRSWYSD LRRDRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-18116760228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.10.0E2F transcription factor-like E2FE
TrEMBLA0A0E0DZT60.0A0A0E0DZT6_9ORYZ; Uncharacterized protein
STRINGOMERI06G10180.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.22e-65DP-E2F-like 1