PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G09800.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 733aa MW: 80493.5 Da PI: 4.8712

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G09800.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.8	6.5e-07	582	611	12	41
HHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLte 41 + L+++F++++yps++++e LA++lgLt OMERI06G09800.2 582 NQKLKAHFKEDPYPSRATKENLAQELGLTF 611 589*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.4E-6	236	274	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.0E-4	242	274	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00389	0.0094	571	629	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.5E-8	572	613	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.85E-6	573	611	IPR009057	Homeodomain-like
CDD	cd00086	7.25E-8	573	613	No hit	No description
Pfam	PF00046	2.1E-4	582	611	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MDKTTTSDLV LDNDNIGSNA GSAQEPLTTN GKTSGVRNRY KQTVKRGRKG SQISPSKTYP 60 LRSSHSNVRV LRSASKKKNE TPIVPTNDNT AVQRVAKKRK RSKPLRPAPS RVLRSTSEKK 120 NNAHNELLND GAGVQPAEKK RKVGRPPKGG TPKDDYLMIR KRVRYVLNRM NYEQSLIQAY 180 ASEGWKGQSL EKIRPEKELE RAKVEILRCK SRIREAFRNL DSLLSEGKLD ESMFDSAGEI 240 SSEDIFCAAC GSKDVTLKND IILCDGICDR GFHQGMKDGF ALHKVFPEAA SFLNGSKQID 300 ASDLPSDDSA DNDYDPTLAQ GHKVDEEKSS GEDGGEGLDS DDSSSEDSES SEKEKSKTSQ 360 NGRTVDDLGL PSEDSEDGDF DPAGPDSDKE QNDESNSDQS DESDFTSDSD DFCAEIAKSC 420 GQDEISGPSS SQIRTVDCTD GSGFDGDPNA ENSNLAFMET ELEQDMVLPI SSKRQVERLD 480 YKKLYNEAYG KASSDSSDDE EWYGNSTPEK GNLEDSETDS LAESPQGGKG FSRRAPVRYH 540 NNEHTPQNVR PGGSVSDQQT EVLCSNSNGS TAKNRHFGPA INQKLKAHFK EDPYPSRATK 600 ENLAQELGLT FNQENNIENH TAENNNNSNT VDSIQLRGSN DIVSVDRNDM VSEERTGQSN 660 LNEGTPLRSD TSCGQSVAVT PMVHPENQGN DSSSNVRTPN AKSAEKLIPG LENSDEARRK 720 AVQRELRKMK TGR

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MDKTTTSDLV LDNDNIGSNA GSAQEPLTTN GKTSGVRNRY KQTVKRGRKG SQISPSKTYP  60
LRSSHSNVRV LRSASKKKNE TPIVPTNDNT AVQRVAKKRK RSKPLRPAPS RVLRSTSEKK  120
NNAHNELLND GAGVQPAEKK RKVGRPPKGG TPKDDYLMIR KRVRYVLNRM NYEQSLIQAY  180
ASEGWKGQSL EKIRPEKELE RAKVEILRCK SRIREAFRNL DSLLSEGKLD ESMFDSAGEI  240
SSEDIFCAAC GSKDVTLKND IILCDGICDR GFHQGMKDGF ALHKVFPEAA SFLNGSKQID  300
ASDLPSDDSA DNDYDPTLAQ GHKVDEEKSS GEDGGEGLDS DDSSSEDSES SEKEKSKTSQ  360
NGRTVDDLGL PSEDSEDGDF DPAGPDSDKE QNDESNSDQS DESDFTSDSD DFCAEIAKSC  420
GQDEISGPSS SQIRTVDCTD GSGFDGDPNA ENSNLAFMET ELEQDMVLPI SSKRQVERLD  480
YKKLYNEAYG KASSDSSDDE EWYGNSTPEK GNLEDSETDS LAESPQGGKG FSRRAPVRYH  540
NNEHTPQNVR PGGSVSDQQT EVLCSNSNGS TAKNRHFGPA INQKLKAHFK EDPYPSRATK  600
ENLAQELGLT FNQENNIENH TAENNNNSNT VDSIQLRGSN DIVSVDRNDM VSEERTGQSN  660
LNEGTPLRSD TSCGQSVAVT PMVHPENQGN DSSSNVRTPN AKSAEKLIPG LENSDEARRK  720
AVQRELRKMK TGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	101	KKRKRS
2	96	103	KKRKRSKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB081340	0.0	AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBank	AK121314	0.0	AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBank	FJ940197	0.0	FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644127.1	0.0	homeobox protein HAZ1 isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0E0DZE8	0.0	A0A0E0DZE8_9ORYZ; Uncharacterized protein
STRING	OMERI06G09290.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-53	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]