PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G09680.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 405aa MW: 40592.7 Da PI: 9.8127

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G09680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.6	8.8e-42	67	247	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ OMERI06G09680.1 67 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 160 789****************************************************************9999899999999988888999999 PP TCP 89 ....................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137 + +s+ + s +s + l+++ s + a a+ +r+ r++++m+++++++ OMERI06G09680.1 161 glagprfggaraadawervvglgfgggaadapssatS--SSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQQQ 247 999999*****************999999986422..33335555666666566666644422333333566668888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.0E-45	71	247	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	73	127	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDVTGDGGGG GRRPNFPLQL LGKKEEQTCS TSQSAGAGGG GGGVVGANGS AAAAQGELQV 60 RTKAAAPPKR TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIEWLLQQA 120 EPAVIAATGT GTIPANFTSL NISLRSSGSS LSIPSHLRLA GLAGPRFGGA RAADAWERVV 180 GLGFGGGAAD APSSATSSSS SPLLLSFHSG SVGLDVSPPS ASTSPAAADL SRKRRWEQEM 240 QQQQQQQQYQ QQMAGYTQSQ IPAGTVWMVP SSNAQAAAGG GAPPGGGGES IWTFPQSGSG 300 GGGGGAATVY RGVPSGLHFM NFPATPMALL PGGQQLGLAG AGGGGEGHPG ILAALNAYRA 360 QAAQPDAGAA AQNGAQGSSQ HRQHQHHGGG GGGDERHESM SASDS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDVTGDGGGG GRRPNFPLQL LGKKEEQTCS TSQSAGAGGG GGGVVGANGS AAAAQGELQV  60
RTKAAAPPKR TSTKDRHTKV DGRGRRIRMP AICAARVFQL TRELGHKTDG ETIEWLLQQA  120
EPAVIAATGT GTIPANFTSL NISLRSSGSS LSIPSHLRLA GLAGPRFGGA RAADAWERVV  180
GLGFGGGAAD APSSATSSSS SPLLLSFHSG SVGLDVSPPS ASTSPAAADL SRKRRWEQEM  240
QQQQQQQQYQ QQMAGYTQSQ IPAGTVWMVP SSNAQAAAGG GAPPGGGGES IWTFPQSGSG  300
GGGGGAATVY RGVPSGLHFM NFPATPMALL PGGQQLGLAG AGGGGEGHPG ILAALNAYRA  360
QAAQPDAGAA AQNGAQGSSQ HRQHQHHGGG GGGDERHESM SASDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064240	0.0	AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBank	AP003513	0.0	AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBank	AP003569	0.0	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641757.1	1e-150	transcription factor TCP15
Swissprot	Q93Z00	4e-49	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A0E0DZC6	0.0	A0A0E0DZC6_9ORYZ; Uncharacterized protein
STRING	OMERI06G09160.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-43	TCP family protein

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]