PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G09450.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 428aa    MW: 46944.9 Da    PI: 4.8926
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G09450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.7e-2779128150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                      krien+ nr+vtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  OMERI06G09450.1  79 KRIENSANRKVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 128
                      79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-3671130IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.83371131IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-2872148IPR002100Transcription factor, MADS-box
CDDcd002656.62E-3672148No hitNo description
PRINTSPR004041.1E-247393IPR002100Transcription factor, MADS-box
PROSITE patternPS00350073127IPR002100Transcription factor, MADS-box
PfamPF003191.1E-2480127IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-2493108IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24108129IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDAVRPLQPA DRVAPQPDKT SSPFTRYIDL PATLHKPYKT ISSPSPRLAD RSTDDGRNIA  60
VDRSESPAAA MGRVKLQIKR IENSANRKVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP  120
SGRLSHFSGR RRIEDVLTRY INLPESDRGG YVNFFDGKVS QRDFNLNLAL FLVFVLNLGA  180
LADPGAAVRR RLTPTLRMFE PDPARSASME DVEASEKFIA GILSRVEERK RYLLCSMGSF  240
DVTASTSAMQ HLSDTDEIQA VERALLYLPQ QHQHGDITGN GFGSDEVASW VSEGMPPPTS  300
SVASIFAGTS DSMMSFRDQA VYDTMRQDAC VHQTVVPEMG MCHVNQSDDW QTYTSAEFLN  360
ALIPPTPFPL DDEDTMGPVL ASSPPLMPGI HDQQPPEEDM ATAGCSQAPA NDGNGLYAAE  420
DIAPVNVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-1771145174MEF2 CHIMERA
6byy_B8e-1771145174MEF2 CHIMERA
6byy_C8e-1771145174MEF2 CHIMERA
6byy_D8e-1771145174MEF2 CHIMERA
6bz1_A8e-1771145174MEF2 CHIMERA
6bz1_B8e-1771145174MEF2 CHIMERA
6bz1_C8e-1771145174MEF2 CHIMERA
6bz1_D8e-1771145174MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117760.0AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence.
GenBankFN6631300.0FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641968.20.0agamous-like MADS-box protein AGL66
TrEMBLA0A0E0DZ970.0A0A0E0DZ97_9ORYZ; Uncharacterized protein
STRINGOMERI06G08930.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-48AGAMOUS-like 66