PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G06280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 550aa    MW: 60709.2 Da    PI: 5.7426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G06280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09190237347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  OMERI06G06280.1 190 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 237
                      68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-12183241IPR009057Homeodomain-like
PROSITE profilePS5129413.178183242IPR017930Myb domain
SuperFamilySSF466891.17E-13185240IPR009057Homeodomain-like
SMARTSM007177.2E-6187240IPR001005SANT/Myb domain
CDDcd116605.01E-16189238No hitNo description
PfamPF002492.0E-7190237IPR001005SANT/Myb domain
SuperFamilySSF519711.0E-4276397No hitNo description
PfamPF012661.6E-9300530IPR006076FAD dependent oxidoreductase
Gene3DG3DSA:3.30.9.109.9E-9353479No hitNo description
SuperFamilySSF519711.0E-4467535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAAERIVGDG AIETWRAADE VTRAKYRLLA GEQRAREIEG KLGETIHQGN QISTPEVHKV  60
MDALKSSCAN LHSVVEDPLP AAKAAADEVL AARMDKAVNL NAGEVSNQPT ACDIAGPSAP  120
ADNLDAPRKG TAASLMDWNP TARTFQWEDS PDPDGSRSPI HRPQLPSPRR TTFSPLQPAD  180
NKAKRRKARK WCALEEETLR KGVEQYGNGN WKDILTNNPD VFIGRKAMDL KDKWRNMMSE  240
NLYPAFAVYI IPTVVINHQC LLVHFATTRM LNLVLPFLFL VYDLDCFDLS KLECSEFPPE  300
LQPSIYMPLA LNINPKKYLQ VALFFACQNM SDEASLSSSE QKECKLYNEH VDDLQQLAGD  360
YDSVIICLGA RANSLPELTN KIPLRTCRGV IAEFQLPSDT IETYGSQSPS ILSDAWLAFQ  420
GPRTVSIGST WQWKSENYSS SVSDDEALNA MEELLPKASA VYPGITKWKF VQARAGIRAM  480
PPLTANGSLP LLGCLNDVIS KRSNCSFWLV GGLGARGLLF HGLAGKLTAK AVISCDENLI  540
PPEFTCWKEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429750.0AK242975.1 Oryza sativa Japonica Group cDNA, clone: J090092I02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DXX70.0A0A0E0DXX7_9ORYZ; Uncharacterized protein
STRINGOMERI06G06010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5