PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G04040.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 360aa    MW: 38422.7 Da    PI: 5.1743
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G04040.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.4e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ ++  e++  C  ++  lC  C +e H        H++vpl
  OMERI06G04040.3  4 QCNACGAAEARVLCCADEAALCTACDEEVHAAnklagkHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box29.81.2e-096395335
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                      +kC+ ++e    +fC +++ llC+dC +++H 
  OMERI06G04040.3 63 VPKCDICQEASGYFFCLEDRALLCRDCDVSIHT 95
                     589*****************************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.722147IPR000315B-box-type zinc finger
CDDcd000211.06E-8347No hitNo description
PfamPF006432.7E-5447IPR000315B-box-type zinc finger
SMARTSM003363.0E-9447IPR000315B-box-type zinc finger
SMARTSM003365.0E-1661108IPR000315B-box-type zinc finger
CDDcd000219.79E-1064108No hitNo description
PfamPF006431.8E-76495IPR000315B-box-type zinc finger
PROSITE profilePS501198.71766108IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006744Biological Processubiquinone biosynthetic process
GO:0032259Biological Processmethylation
GO:0031314Cellular Componentextrinsic component of mitochondrial inner membrane
GO:0004395Molecular Functionhexaprenyldihydroxybenzoate methyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0008425Molecular Function2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0061542Molecular Function3-demethylubiquinone-n 3-O-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCTACDE EVHAANKLAG KHQRVPLLSD DGGAPAAAAA  60
PAVPKCDICQ EASGYFFCLE DRALLCRDCD VSIHTVNSFV SVHQRFLLTG VQVGLDPADP  120
VPPVADKHVK SAGGSVDSAT KHLQRNPTDL SGENSASLPS QNVINGNYSR QSSVTMAKTG  180
QVNWTMSNNT IRSIDPPPKY SSEESPALLL ASHTSTMAAY SNQISKDSDR IYNLPFTGGN  240
GSDSLHDWHV DEFFSNSEFG FAEHGSSKGD NAKPGSAGGS PQCRLAEGLF VEGLLGQVPD  300
NPWTVPEVPS PPTASGLYWQ NNLLCPSYDS TMFVPEISSL ENSQNNFTVS AGLKRRRRQF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018860.0AB001886.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R2931.
GenBankAK0722310.0AK072231.1 Oryza sativa Japonica Group cDNA clone:J023001E21, full insert sequence.
GenBankAK1040830.0AK104083.1 Oryza sativa Japonica Group cDNA clone:001-029-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644333.10.0B-box zinc finger protein 22
TrEMBLA0A0E0DX300.0A0A0E0DX30_9ORYZ; Uncharacterized protein
STRINGOMERI06G03920.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-55light-regulated zinc finger protein 1