PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G03620.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 853aa MW: 93840.4 Da PI: 6.6939 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.7 | 5.6e-29 | 538 | 588 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OMERI06G03620.4 538 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 588 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.734 | 527 | 608 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.8E-26 | 540 | 588 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.37E-20 | 745 | 841 | No hit | No description |
SMART | SM00666 | 8.0E-18 | 755 | 838 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 18.398 | 755 | 838 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 3.7E-24 | 755 | 836 | No hit | No description |
Pfam | PF00564 | 4.0E-15 | 756 | 836 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.14E-43 | 756 | 836 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MVGDSEGNLT CMEEGDPQPS ISLARTPSEG AAAAVDLDLL EQLLSADNAW LVVAANTSRS 60 PNFFATPSNC LTDASVATTT PANSWWIQPS GASTSIRERF DQALSYIRET QSDAGVLVQL 120 WVPVKGNDGQ LVLTTSGQPF TLDQRSNSLI QFREVSTKYQ FSADVASGSS PGLPGRVFIG 180 RLPEWSPDVR YFTSYEYPRI SHAQYLDVHG TMGLPVFERG NYSCLGVIEL IMTKQKLNFT 240 SELNTICSAL QAVNLTSTEV SSIPRTKLNS ASYKDALPEI LEVLRAACIT HKLPLAQTWV 300 TCAQQGKRGS RHSDENYKYC ISTIDAACYV NEPQMQSFHE ACSEHHLLRG QGVAGKAFTT 360 NQPCFLPDIG SSTKLEYPLS HHAKIFNLKG AVAIRLRCTR TGIADFVLEF FLPTDCEVLE 420 EQKAVLDSLS GTMRSVCQTL RVVTDKEMED EAMREMNELN SFSPRGKNKV EELSFGDNTR 480 EDREETSWTT LVGTSQKRSD LAELHTHGML SHGGQGSSQA GDQTSKEGSK VKRRTKTEKT 540 VSLQVLRQYF AGSLKDAAKS LGVCPTTLKR ICRQHGINRW PSRKIKKVDH SLRKLQQIID 600 SVHGAETAFQ LNTLYKDLTN TSVSSDNNLS GSVTVPLANQ NNLDFEKHQH HRLSSNIPST 660 SLSHSSCSQS SDSSPSCSGG ATKHSPQVGA DQVRSGCLPQ HTPVQTLQTE AASINEHFSG 720 QEAPIDLLQD VAEKANGEQQ MSQSPSSPKQ TANVGMRVKV TFGSEKVRFR LKPECDFQEL 780 KQEISKRLSI VDMNSLIVKY LDDDSEWVLM TCDADLHECF HVYKLADIQT IKISVHLAAS 840 PTTRITIGHT GFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005679 | 0.0 | AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612115.1 | 0.0 | protein NLP1-like isoform X1 | ||||
TrEMBL | A0A0E0DWX3 | 0.0 | A0A0E0DWX3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART09G18730.2 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |