PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G03620.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 899aa MW: 98780.1 Da PI: 6.7563 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.6 | 6e-29 | 584 | 634 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OMERI06G03620.3 584 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 634 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.734 | 573 | 654 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-25 | 586 | 634 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.47E-20 | 791 | 887 | No hit | No description |
PROSITE profile | PS51745 | 18.398 | 801 | 884 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.0E-24 | 801 | 882 | No hit | No description |
SMART | SM00666 | 8.0E-18 | 801 | 884 | IPR000270 | PB1 domain |
CDD | cd06407 | 3.77E-43 | 802 | 882 | No hit | No description |
Pfam | PF00564 | 4.3E-15 | 802 | 882 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MMCSSLLPTP CNPNAGKSST KFIPGLPVSC TPLAQDVQRA LLLDSEQERN SEGNLTCMEE 60 GDPQPSISLA RTPSEGAAAA VDLDLLEQLL SADNAWLVVA ANTSRSPNFF ATPSNCLTDA 120 SVATTTPANS WWIQPSGAST SIRERFDQAL SYIRETQSDA GVLVQLWVPV KGNDGQLVLT 180 TSGQPFTLDQ RSNSLIQFRE VSTKYQFSAD VASGSSPGLP GRVFIGRLPE WSPDVRYFTS 240 YEYPRISHAQ YLDVHGTMGL PVFERGNYSC LGVIELIMTK QKLNFTSELN TICSALQAVN 300 LTSTEVSSIP RTKLNSASYK DALPEILEVL RAACITHKLP LAQTWVTCAQ QGKRGSRHSD 360 ENYKYCISTI DAACYVNEPQ MQSFHEACSE HHLLRGQGVA GKAFTTNQPC FLPDIGSSTK 420 LEYPLSHHAK IFNLKGAVAI RLRCTRTGIA DFVLEFFLPT DCEVLEEQKA VLDSLSGTMR 480 SVCQTLRVVT DKEMEDEAMR EMNELNSFSP RGKNKVEELS FGDNTREDRE ETSWTTLVGT 540 SQKRSDLAEL HTHGMLSHGG QGSSQAGDQT SKEGSKVKRR TKTEKTVSLQ VLRQYFAGSL 600 KDAAKSLGVC PTTLKRICRQ HGINRWPSRK IKKVDHSLRK LQQIIDSVHG AETAFQLNTL 660 YKDLTNTSVS SDNNLSGSVT VPLANQNNLD FEKHQHHRLS SNIPSTSLSH SSCSQSSDSS 720 PSCSGGATKH SPQVGADQVR SGCLPQHTPV QTLQTEAASI NEHFSGQEAP IDLLQDVAEK 780 ANGEQQMSQS PSSPKQTANV GMRVKVTFGS EKVRFRLKPE CDFQELKQEI SKRLSIVDMN 840 SLIVKYLDDD SEWVLMTCDA DLHECFHVYK LADIQTIKIS VHLAASPTTR ITIGHTGFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005679 | 0.0 | AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612115.1 | 0.0 | protein NLP1-like isoform X1 | ||||
TrEMBL | A0A0E0DWX2 | 0.0 | A0A0E0DWX2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G19240.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5554 | 38 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |