PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G03280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Whirly | ||||||||
Protein Properties | Length: 271aa MW: 30134.4 Da PI: 9.73 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 193 | 4.6e-60 | 96 | 234 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 s+yk+kaa++++++ p+f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+l OMERI06G03280.1 96 SIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVL 189 7********************************************************************************************* PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 kveP pdG f+nlsv+n l++ +e++++P++k+efav+ s ++ OMERI06G03280.1 190 KVEPTPDGNSRFFNLSVQNRLLNIDENIYIPITKGEFAVIVSTFN 234 ****************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.1E-79 | 83 | 256 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.83E-78 | 88 | 271 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 9.0E-59 | 97 | 231 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MPPPSPPLFL SLPSPPPPLP HLLPSHRPPA ALALAPMLSS RRVTSVCPVA SQRHSDYFDP 60 RAPPPPPPRD GYGGPAYSPP AAQGGQQNGR VFSTYSIYKG KAAMSLDPRP PQFVPLDSGA 120 YKVVKEGFVL LQFAPAVATR QYDWTRKQVF SLSVWEMGSL LTLGPTDSCE FFHDPFKGRS 180 DEGKVRKVLK VEPTPDGNSR FFNLSVQNRL LNIDENIYIP ITKGEFAVIV STFNYIIPHL 240 MGWSTFTNSI KPEDSRAYTR PQSGPEYEWR R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 6e-91 | 90 | 269 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 6e-91 | 90 | 269 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 6e-91 | 90 | 269 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 6e-91 | 90 | 269 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836194 | 0.0 | CT836194.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048P18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641336.1 | 1e-152 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | B2LXS7 | 1e-140 | WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A0E0DWS5 | 0.0 | A0A0E0DWS5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G02670.1 | 1e-160 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 2e-96 | ssDNA-binding transcriptional regulator |
Publications ? help Back to Top | |||
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