PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 472aa    MW: 50369.4 Da    PI: 6.0408
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.12.1e-601234711374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      lv+ Ll++A+ +++gd + a+++Larl+++     sp +    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ ++
  OMERI06G00270.1 123 LVDHLLDAARLLDAGDSTSAREILARLNHRlpslPSPPDHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALADA 206
                      5789*************************976543333323457888888888888655444.........33333.4669999********** PP

             GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      sP+++f+ +t  q  l+a+  ++r+H +Dfd+  G++Wp+L+q+La     +  ++pp+l++T+++sp s +  el+ t+e L++fA+elg+pf
  OMERI06G00270.1 207 SPTVQFTTFTSTQLFLDALGAARRLHLLDFDVAFGAHWPPLMQELAhhwR-RaaAPPPNLKVTALVSPGSRHPLELHLTNESLTRFAAELGIPF 299
                      **********************************************5533.3578899************************************ PP

             GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      ef+vlv + l++ ++  L + ++Ea+aV+l     ++         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++al +s
  OMERI06G00270.1 300 EFTVLVFDPLSSASP-PLGL-SDEAVAVHLTAGSGTFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRSCAALVES 376
                      *****9999999965.6766.58*********999997........56789********************966.......56678999***** PP

             GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                      l+a  ++  +  +kvE+++l+++++ +    g             +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W++
  OMERI06G00270.1 377 LDAA-GASPDVVSKVEQFVLRPRVERLAVGVGGG--------PPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQR 461
                      *888.5666999*************998877776........67799*********************************************** PP

             GRAS 365 rpLvsvSaWr 374
                       +LvsvSaWr
  OMERI06G00270.1 462 SELVSVSAWR 471
                      *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.76797451IPR005202Transcription factor GRAS
PfamPF035147.4E-58123471IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSPSTSL GSCSSKPPED PPPPPIAADD  60
YCEDWDAVVD MHMLAPAPAP DSSFLRWIMD AGYANADADH PSFDSDLLQL PMPMPSDHPP  120
QPLVDHLLDA ARLLDAGDST SAREILARLN HRLPSLPSPP DHAHPPLLRA AALLRDALLP  180
PTALPVSSTP LDVPLKLAAH KALADASPTV QFTTFTSTQL FLDALGAARR LHLLDFDVAF  240
GAHWPPLMQE LAHHWRRAAA PPPNLKVTAL VSPGSRHPLE LHLTNESLTR FAAELGIPFE  300
FTVLVFDPLS SASPPLGLSD EAVAVHLTAG SGTFSPAPAH LRVVKELRPA VVVCVDHGCE  360
RGALNLLRSC AALVESLDAA GASPDVVSKV EQFVLRPRVE RLAVGVGGGP PLQSMLASAG  420
FAALQVSNAA EAQAECLLRR TASHGFHVEK RQAALALWWQ RSELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2420047180375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.10.0scarecrow-like protein 6
TrEMBLA0A0E0DVI20.0A0A0E0DVI2_9ORYZ; Uncharacterized protein
STRINGOMERI06G00270.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-55GRAS family protein