PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00230.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 363aa    MW: 41442.1 Da    PI: 6.9207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-54161521129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                      +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       ++++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  OMERI06G00230.1  16 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 108
                      69****************************.99**************9557777664455778******************************* PP

              NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +dk+++++  ++ lvg++ktLv+y+grap+g+k+dW+mheyrle
  OMERI06G00230.1 109 RDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 152
                      ******98434445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-606172IPR003441NAC domain
PROSITE profilePS5100559.53116172IPR003441NAC domain
PfamPF023652.1E-2817151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDGSSMSSSS TQQAQVPPGF RFHPTDEELV DYYLRKKVAA RRIDLNVIKD VDLYKIEPWD  60
LQERCRINGG SAAEEQNEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KPIYATKQHS  120
LLVGMRKTLV YYRGRAPNGH KSDWIMHEYR LETTETAPPQ EEGWVVCRVF KKRLPTTRRD  180
SDHDAPCGSW YVDEDAPGAF MSPMMITRSS ILRPHQHHAG ITLQEQHLHT TYKHRDLTTK  240
IQQLQVPAAG HHLLNTMPHD LESSTSSFHS LLVSPDHHKI NMHHAQADPF FDDMHAVDQA  300
TTTDWRVLDK FVASQLSNDA TNKPADHYTD EGDILQVSDK QQEVAAADYA STSTSSSQID  360
PWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4931732169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340760.0JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642963.10.0NAC domain-containing protein 105
RefseqXP_015642964.10.0NAC domain-containing protein 105
SwissprotF4HYV51e-103NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A0E0DVH40.0A0A0E0DVH4_9ORYZ; Uncharacterized protein
STRINGORUFI06G00250.10.0(Oryza rufipogon)
STRINGOS06T0104200-010.0(Oryza sativa)
STRINGONIVA06G00260.10.0(Oryza nivara)
STRINGORGLA06G0002300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.13e-92Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]