PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G00050.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 632aa    MW: 70292.6 Da    PI: 6.9322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G00050.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.22.5e-47872171128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptdeelv +yLk k++g++++    i++vd+ ++ePwdLp +  +k++  ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ +
  OMERI06G00050.4  87 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDYPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 180
                      79*************************999889***************5345666667************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+  g l+g+kktLvf++grap+g +t W+mheyr 
  OMERI06G00050.4 181 RSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 217
                      **988889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-5278224IPR003441NAC domain
PROSITE profilePS5100552.14987237IPR003441NAC domain
PfamPF023658.2E-2688216IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MLRQPGQGEQ AAVGGWKSGE IGEDGSLSSR SRPVQHFGGG RSRVKAVNEE EDGNVMAMTE  60
RSEKGKVAMK QGKVEMTPAV AAAAAVLPVG FRFRPTDEEL VRHYLKGKIA GRSHPDLLLI  120
PDVDLSTCEP WDLPAMSVIK SDYPEWFFFA PRDRKYPGGH RSNRSTAAGY WKATGKDRLI  180
RSRPAGPLIG IKKTLVFHRG RAPRGLRTAW IMHEYRTTEP HFQSGKNDDA FLDVLSQLPD  240
LEPEQRYNGF PNITSPIRPY SDHPFVGNLG EQDLSAHFGS TLSEQDLQSL LFSPNYTKMD  300
KHPTGNVESN PTASSNNPNN NTLLMDSWRK NDSYQMLLIQ SSSMVYSGVA EGSPLCNQDQ  360
LHSAFNPHME SQKSGAFCWA GLRTPYPQHW FDTMVEPGRS GMTLSDALKE QGQEQAPSMK  420
HLTAQDLVDP QQGTAARRIR LVCSVERVSV SQPVSSHLQC EYEAGSCCNT RNSSNNNKKE  480
SVRSEYEAGS CCNTGSSSNN HSEENDDAAS QIMDGEPMHI QCKEDTPIQV DHSVEVMDKL  540
QGFSFHEEML VHANQPRGTN LKQRLLRVES RNSNENNAPS LETRGQQHAP HIQIWTSSVV  600
RLGWGWQWPA LFVMAGSLLL LVGVWKSLNH TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-41812169139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641780.0AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0E0DVC80.0A0A0E0DVC8_9ORYZ; Uncharacterized protein
STRINGOMERI06G00050.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-61NAC transcription factor-like 9