PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 748aa MW: 82795.1 Da PI: 6.594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.8 | 3.2e-47 | 87 | 217 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrF+Ptdeelv +yLk k++g++++ i++vd+ ++ePwdLp + +k++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ + OMERI06G00050.1 87 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDYPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRLI 180 79*************************999889***************5345666667************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ g l+g+kktLvf++grap+g +t W+mheyr OMERI06G00050.1 181 RSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 217 **988889***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-54 | 78 | 238 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.417 | 87 | 238 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 88 | 216 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MLRQPGQGEQ AAVGGWKSGE IGEDGSLSSR SRPVQHFGGG RSRVKAVNEE EDGNVMAMTE 60 RSEKGKVAMK QGKVEMTPAV AAAAAVLPVG FRFRPTDEEL VRHYLKGKIA GRSHPDLLLI 120 PDVDLSTCEP WDLPAMSVIK SDYPEWFFFA PRDRKYPGGH RSNRSTAAGY WKATGKDRLI 180 RSRPAGPLIG IKKTLVFHRG RAPRGLRTAW IMHEYRTTEP HFQSGKNGSF VLYRLFNKHE 240 QDDTHTPASN LDQQLHSMSS QGNPQNGTPA VQPALASIMK VHQTLPSSGF SQLTEIQDAS 300 TSVHDKEQTV AHDDAFLDVL SQLPDLEPEQ RYNGFPNITS PIRPYSDHPF VGNLGEQDLS 360 AHFGSTLSEQ DLQSLLFSPN YTKMDKHPTG NVESNPTASS NNPNNNTLLM DSWRKNDSYQ 420 MLLIQRADNT DATCCSSSIN APQTETSDAN LEARVQSSSM VYSGVAEGSP LCNQDQLHSA 480 FNPHMESQKS GAFCWAGLRT PYPQHWFDTM VEPGRSGMTL SDALKEQGQE QAPSMKHLTA 540 QDLVDPQQGT AARRIRLVCS VERVSVSQPV SSHLQCEYEA GSCCNTRNSS NNNKKESVRS 600 EYEAGSCCNT GSSSNNHSEE NDDAASQIMD GEPMHIQCKE DTPIQVDHSV EVMDKLQGFS 660 FHEEMLVHAN QPRGTNLKQR LLRVESRNSN ENNAPSLETR GQQHAPHIQI WTSSVVRLGW 720 GWQWPALFVM AGSLLLLVGV WKSLNHTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-42 | 81 | 241 | 9 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064178 | 0.0 | AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642953.1 | 0.0 | NAC domain-containing protein 7 | ||||
TrEMBL | A0A0E0DVC5 | 0.0 | A0A0E0DVC5_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI06G00070.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 1e-63 | NAC transcription factor-like 9 |