PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G23100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 110aa    MW: 12444.9 Da    PI: 9.8021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G23100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-082468344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +++ +a + + ++   +W+ Iar+mg  +++ +++ ++
  OMERI05G23100.1 24 GWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGAKSADEVRRHF 68
                     6*****************99*************889*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.8E-52174IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-102380IPR009057Homeodomain-like
PfamPF002491.3E-52368IPR001005SANT/Myb domain
CDDcd001679.27E-72568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MASAAGSKQQ QAMMSLPSSR GVGGWTQRQN KQFECALAVY DKETPDRWHN IARYMGGAKS  60
ADEVRRHFDH LVEDVARIES GRVPFPRYSS SFSPSRGADD GNRCRYLKYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-241691176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364521e-159CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639028.11e-63protein RADIALIS-like 3
SwissprotQ1A1734e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0E0DUU82e-77A0A0E0DUU8_9ORYZ; Uncharacterized protein
STRINGORUFI05G28990.16e-66(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-26RAD-like 6