PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G23010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 274aa    MW: 27883.7 Da    PI: 7.1949
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G23010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.8e-20154188135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++
  OMERI05G23010.1 154 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 188
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-20148200IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14151188No hitNo description
PROSITE profilePS5011413.916152184IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-17152188IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.53E-14153185No hitNo description
PfamPF003207.6E-18154188IPR000679Zinc finger, GATA-type
PROSITE patternPS003440154179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPMSNGQ CWPSSTVEES AAYDDHSTVT  60
TSPSSPSSSS TGSVDCTLSL GTPSSRRAEP VAVAAAAPAA SHGAPAPAHY PSLSAATVSW  120
DATAESYYCG QQGRPAGGAA KCAAGHDALL DRRCANCGTA STPLWRNGPR GPKSLCNACG  180
IRYKKEERRA AAATTTADGA AGCGFITAQR GRGSTAAKAA PAVTTCGEET SPYVVGGGVE  240
VADAAYLAWR LNVVPSAATA FSVWPERASL YHYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734640.0AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012870.0AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845460.0DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638999.11e-139GATA transcription factor 15
SwissprotQ6L5E51e-140GAT15_ORYSJ; GATA transcription factor 15
TrEMBLA0A0E0DUT80.0A0A0E0DUT8_9ORYZ; Uncharacterized protein
STRINGOMERI05G22320.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-22GATA transcription factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]