PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G22870.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 274aa MW: 30933 Da PI: 10.3051

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G22870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.5	9.7e-13	86	134	6	54
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++++ q ++L e+++ n++++ +++++LA++l+L +qV WF NrR + OMERI05G22870.1 86 RLSRVQSKQLDEFYRVNHTVDSKQKKKLADRLNLRISQVDAWFRNRRLR 134 67899******************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-12	67	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-11	76	134	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.195	78	138	IPR001356	Homeobox domain
SMART	SM00389	2.4E-4	81	142	IPR001356	Homeobox domain
CDD	cd00086	1.68E-7	85	134	No hit	No description
Pfam	PF00046	2.8E-10	86	134	IPR001356	Homeobox domain
SMART	SM00340	4.0E-5	192	235	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGCNNNN TRELGIHLYL DRPYAREELP 60 QQGDSMEVQK GEERGGVRHN SSNHRRLSRV QSKQLDEFYR VNHTVDSKQK KKLADRLNLR 120 ISQVDAWFRN RRLRGCEPND SSKKALTSFH KQQYRVSSVE QVQSSSSAPV TVMLLLVIPF 180 RLIFTNLQSK QKSTEMECAY LKECFNKQKE ENHLLQLQVE QLRSTSLQLQ LHSERVATAP 240 TGQQAGTSAA ARIFTSPWPG SNPSRRTWFS PNAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	1e-117	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638698.1	1e-115	homeobox-leucine zipper protein HOX3
TrEMBL	A0A0E0DUR7	0.0	A0A0E0DUR7_9ORYZ; Uncharacterized protein
STRING	ORUFI05G28790.1	1e-142	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19065	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-09	homeobox-leucine zipper protein 17