PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G22110.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 373aa    MW: 39428.9 Da    PI: 10.2214
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G22110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-124492155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  OMERI05G22110.1 44 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAQRFRG 92
                     89****9888.8*********......44**********99*************98 PP
2B391.37e-29171284192
                      EEEE-..-HHHHTT-EE--HHH.HTT.......................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                      f+k+ tpsdv+k++rlv+pk++ae+h                       g  + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+
  OMERI05G22110.1 171 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlppptttssvaaaadaaaaG-GECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 263
                      89***************************888888888777777777743.34499************************************** PP

                      HT--TT-EEEEEE-SSSEE.. CS
               B3  72 ngLkegDfvvFkldgrsefel 92 
                      +gL +gD v F++   ++++l
  OMERI05G22110.1 264 KGLHAGDAVGFYRAAGKNAQL 284
                      ************765555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.25E-2344100No hitNo description
PfamPF008472.5E-84492IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1644100IPR016177DNA-binding domain
PROSITE profilePS5103219.86245100IPR001471AP2/ERF domain
SMARTSM003803.2E-2645106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1945100IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-39162297IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-26169276No hitNo description
SuperFamilySSF1019362.22E-28169289IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-26171286IPR003340B3 DNA binding domain
SMARTSM010192.6E-20171291IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041171292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDSTSCLLDD ASSGASTGKK AAAAAPAAKA LQRVGSGASA LPSSKYKGVV PQPNGRWGAQ  60
IYERHQRVWL GTFTGEAEAA RAYDVAAQRF RGRDAVTNFR PLAESDPEAA VELRFLASRS  120
KAEVVDMLRK HTYLEELAQN KRAFAAISPP PPKHPASSPP SSSAAAREHL FDKTVTPSDV  180
GKLNRLVIPK QHAEKHFPLQ LPPPTTTSSV AAAADAAAAG GECKGVLLNF EDAAGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD AVGFYRAAGK NAQLFIDCKV RAKPTTTAAA  300
AAFLSAVAAA AAPPPAVKAI RLFGVDLLTA AAAAELQDAG GAAMIKSKRA MDAMAESQAH  360
VVFKKQCIEL ALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5016829211118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307250.0AC130725.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0494H05, complete sequence.
GenBankAC1359250.0AC135925.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0560C03, complete sequence.
GenBankAC1364920.0AC136492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0554F08, complete sequence.
GenBankAK2433630.0AK243363.1 Oryza sativa Japonica Group cDNA, clone: J100061M08, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637817.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H40.0Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A0E0DUG50.0A0A0E0DUG5_9ORYZ; Uncharacterized protein
STRINGOMERI05G21370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-92RAV family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]