PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G21780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 35721.7 Da PI: 5.8845 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.2e-09 | 16 | 59 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqc 40 +g W++eEd++l++ + ++G g+W+++++ g + + + +c OMERI05G21780.1 16 KGLWSPEEDDKLYNHIIRHGVGCWSSVPKLAGkqerTQLIDRHC 59 678*****************************855555555555 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ OMERI05G21780.1 92 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 135 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-21 | 11 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.036 | 11 | 86 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.2E-7 | 13 | 53 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-8 | 15 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-10 | 16 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.72E-8 | 19 | 86 | No hit | No description |
SuperFamily | SSF46689 | 5.53E-21 | 72 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.038 | 87 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 90 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-15 | 92 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-11 | 94 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGRLSSCGGV QAKLRKGLWS PEEDDKLYNH IIRHGVGCWS SVPKLAGKQE RTQLIDRHCR 60 FGELDWANFG LQRCGKSCRL RWINYLRPDL KRGSFSQQEE DLIVALHEIL GNRWSQIASH 120 LPGRTDNEIK NFWNSCLKKK LRQRGLDPAT HKPIAAAATS SASAVTQVDE DHKPHVAADG 180 LAANAKQSVF DPFPVTDFGA GFDLGAANMA AALYGSHPDD GAGFVADYSS VLDVSDNLGY 240 GESSSNSSNW TCAEVSNVLD REVLNWAASA AAAAAAKAEP FADMEQQHSG YGGEHQVEDD 300 AALEHKFSLP CHEQSLAQFD FNLEYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 141 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837789 | 0.0 | CT837789.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN047M16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638185.1 | 0.0 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-114 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A0E0DUC8 | 0.0 | A0A0E0DUC8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G21030.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-69 | myb domain protein 86 |