PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G21560.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 407aa MW: 41655.2 Da PI: 7.18

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G21560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.2e-06	305	345	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L OMERI05G21560.1 305 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 345 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.259	296	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	302	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.93E-10	302	350	No hit	No description
SMART	SM00353	2.2E-11	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-9	305	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGGSA AAAAVRSDDA 60 YGLDVDLPSH QMSLLRCQDG LSALHGDASP TAAAAFLDSV DVLPVPAIAG AAHDDGGLLD 120 RFAFPNVAET TVQAAASNTA FSGYSSNTTG GGNISSGESN TYTEVASTPC AVSTTTTALP 180 PSKRKVPEKY PVVGTSSTTK TTTTTSGTAA ERRSTKRAAG GSNSITFGGG RHGAGAAAAL 240 LGLGRGYEPD TEAIAQVKEM IYRAAAMRPV TLAAASDPSS AAPPPPQRPR RKNVRISSDP 300 QTVAARLRRE RVSERLRVLQ RLVPGGSKMD TATMLDEAAS YLKFLKSQLE ALETLGNGNG 360 NLLHHGYYTG SRNAAATAAT GSSNSTVLAF GRDRLAGYVK SNRNLQL

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGGSA AAAAVRSDDA  60
YGLDVDLPSH QMSLLRCQDG LSALHGDASP TAAAAFLDSV DVLPVPAIAG AAHDDGGLLD  120
RFAFPNVAET TVQAAASNTA FSGYSSNTTG GGNISSGESN TYTEVASTPC AVSTTTTALP  180
PSKRKVPEKY PVVGTSSTTK TTTTTSGTAA ERRSTKRAAG GSNSITFGGG RHGAGAAAAL  240
LGLGRGYEPD TEAIAQVKEM IYRAAAMRPV TLAAASDPSS AAPPPPQRPR RKNVRISSDP  300
QTVAARLRRE RVSERLRVLQ RLVPGGSKMD TATMLDEAAS YLKFLKSQLE ALETLGNGNG  360
NLLHHGYYTG SRNAAATAAT GSSNSTVLAF GRDRLAGYVK SNRNLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	291	RPRRK
2	305	310	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638480.1	0.0	transcription factor LATE FLOWERING
Swissprot	A0A0P0WQ90	0.0	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0E0DUA5	0.0	A0A0E0DUA5_9ORYZ; Uncharacterized protein
STRING	OMERI05G20820.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-27	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]