PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G20810.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 385aa    MW: 39353.2 Da    PI: 6.776
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G20810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18254288135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  OMERI05G20810.1 254 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 288
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.479248284IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-18248298IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-15249285IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.52E-15250311No hitNo description
CDDcd002026.80E-14253300No hitNo description
PfamPF003201.4E-15254288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVAAADYAG GVRVKKEAGG GGGGGDMFLV DDLLDLPCDD EEEETGLCGA YGGGAGVGAG  60
VVGGGGDDRA AGNASADSST VTAVDSCSNS FSGLADGDFS GGLCEPYEQL AELEWVSTYM  120
GEETLPTEDL RKLQLISGIP AAPRAPPTLA VSAVQLPAGG AGTLPTEAPV PGKARSKRSR  180
VAPCSWSSRL MVLPPPPASP PSPASAVISP SESATAAPAF PAKKAAKSAK KKDGPSPAPA  240
PNAAAQAAAE GRRCLHCETD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF  300
VVSKHSNSHR KVVELRRQKE MQLLHHHQQP PPHVGAGGGG AAGGLLHVTS PLLFDGPTSS  360
APLFAGADEF LIHNRISPDY RRQAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376640.0CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638019.10.0GATA transcription factor 12
TrEMBLA0A0E0DU150.0A0A0E0DU15_9ORYZ; GATA transcription factor
STRINGOMERI05G20010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-46GATA transcription factor 12