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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
OMERI05G19700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 417aa MW: 44669.1 Da PI: 6.2896 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI05G19700.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 262.6 | 1.4e-80 | 37 | 415 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPi 90
+lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar r l++a p+ ++ + +++++++l +++++P+
OMERI05G19700.1 37 LQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACR----LCAAAPVGFLERGRappWGRAMSVTELadYVDLTPW 126
689***************************************************....33333333222222234455555555577******* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
++f++ + N aIl+av+g+++vH++D+++++++QWp+L++ L++Rp+g+p +RiT+ + ++ + + +e+g rLa fA++ gv++efnv+
OMERI05G19700.1 127 HRFGFTASNAAILRAVAGASAVHVVDLSVTHCMQWPTLIDVLSKRPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQLEFNVV 220
*******************************************************9887555578889999**********************9 PP
GRAS 182 ..........vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
++++l+++ ++ +L ++ gEa++Vn++ l ++ +++rd +L++v+ l+P +v+v++++ad++s+s++ r++ ++++
OMERI05G19700.1 221 esatspkkttLCQELASVlsDPPSLGLRDGEAVVVNCQSWLRHVA------PDTRDLFLDTVRALNPCLVTVTDEDADLGSPSLASRMAGCFDF 308
9887776665445555446789999****************9998......66789************************************** PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
++ l+d+l++++p++s r E++ +gr+i++v+ e + er e ++ er+++ GF v ++e+aa+++++ll++++ g+ v+ e++
OMERI05G19700.1 309 HWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVIGEEDGA--ERSEPGARLAERMSRKGFAGVVFDEEAAAEVRRLLSEHA-TGWGVKREDDM 398
*******************999999.**********99988..9**************************************.99********* PP
GRAS 358 lvlgWkdrpLvsvSaWr 374
lvl+Wk+++ v++ aW+
OMERI05G19700.1 399 LVLTWKGHAAVFTGAWT 415
****************5 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MDMEHELRGG GVGAAAHGHG SICFSGGPVL VDGRRILQLL LHCAAALESN DVTLAQQAMW 60
VLNNIASSQG DPSQRLTSWL LRALVARACR LCAAAPVGFL ERGRAPPWGR AMSVTELADY 120
VDLTPWHRFG FTASNAAILR AVAGASAVHV VDLSVTHCMQ WPTLIDVLSK RPGGAPAIRI 180
TVPSVRPAVP PLLAVSSSEL GARLAIFAKS KGVQLEFNVV ESATSPKKTT LCQELASVLS 240
DPPSLGLRDG EAVVVNCQSW LRHVAPDTRD LFLDTVRALN PCLVTVTDED ADLGSPSLAS 300
RMAGCFDFHW ILLDALDMSA PKDSPRRLEQ EAAVGRKIES VIGEEDGAER SEPGARLAER 360
MSRKGFAGVV FDEEAAAEVR RLLSEHATGW GVKREDDMLV LTWKGHAAVF TGAWTPN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC113332 | 0.0 | AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence. |
| GenBank | AC130597 | 0.0 | AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence. |
| GenBank | AK070489 | 0.0 | AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
