PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G18990.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 335aa MW: 35484.9 Da PI: 6.9849

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G18990.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.4e-15	265	308	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ OMERI05G18990.2 265 RRQKRMIKNRESAARSRARKQAYTNELENKVLRLEEENERLKKQ 308 79***************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-14	259	308	No hit	No description
SMART	SM00338	8.2E-10	261	317	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.553	263	308	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-10	265	310	No hit	No description
Pfam	PF00170	1.4E-12	265	308	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.30E-24	265	312	No hit	No description
PROSITE pattern	PS00036	0	268	283	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MIQAMASHAG GSGGGGGGSG RDAGSAQRGP MQGLARQGSL YGLTLNEVQS QLGEPLLSMN 60 LDELLKSVFP DGADLDGGGG GGGVAGQSQP ALGLQRQGSI TMPPELSKKT VDEVWKGIQD 120 VPKRGAEEGG RRRRERQPTL GEMTLEDFLV KAGVVTDPND LPGNMDVVGG AAAAAAGTSD 180 LNAGAQWLQQ YHQQALEPQH PSIGAPYMAT HLAPQPLAVA TGAVLDPIYS DGQITSPMLG 240 ALSDPQTPGR KRGATGEIAD KLVERRQKRM IKNRESAARS RARKQAYTNE LENKVLRLEE 300 ENERLKKQKE LDEILNSAPP PEPKYQLRRT SSAAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	136	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063398	0.0	AK063398.1 Oryza sativa Japonica Group cDNA clone:001-114-H11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638733.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	3e-86	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0E0DTB7	0.0	A0A0E0DTB7_9ORYZ; Uncharacterized protein
STRING	OMERI05G18080.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-64	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]