PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G18690.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 488aa    MW: 51437.1 Da    PI: 6.2776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G18690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.93.2e-851104782373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf++A+aarl++s+ ++++ l+p + ++   +   aa++++++v P+ +++
  OMERI05G18690.1 110 IALLMECAVAMSVGNLAGANGALLELSQMASPYApSCGERLVAYFARAMAARLVGSWVGVAAPLAPPPPPR--AAAINAAFRALYNVAPFARLA 201
                      689*******************************8889************************998888874..67777899************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +l++NqaIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp +R+Tg+g     s+  l+  g++La +A++l ++fef +++ +  
  OMERI05G18690.1 202 YLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPAIRVTGFGM----SASVLHDAGNQLAGLARKLCMSFEFYAVAKRPG 291
                      *************************988447**************************....9**************************877788 PP

             GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleakl 275
                      ++  + +   ++ gEa+aV++    h ++d  ++        ++lv+ l+P+ v++veqe  h++     +Fl+rf++al++ysa+fd++ a+ 
  OMERI05G18690.1 292 DADAVADVPGRRpGEAVAVHWLR--HAMYDAAGDDGT----AMRLVRWLEPTAVTLVEQERAHGGDgghgRFLDRFVSALHHYSAVFDAMGASR 379
                      8888999966656********99..777755555555....9******************88744335559*******************9998 PP

             GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrp 366
                      p  +   r+  E+ +lgrei nv+a  g +r   +e+ ++Wre l + GF  +  +      a+l+ + ++ + gy+v  + +g++ lgWk+ p
  OMERI05G18690.1 380 PDGEdASRHLAEHGVLGREIANVLAVGGPARSSGRERPGSWREVLPRHGFAHAGGGGGG--RAQLVAAACPgGLGYTVAGDhDGTVRLGWKGTP 471
                      8877689999****************************************998887765..5667888999899*****66166666******* PP

             GRAS 367 LvsvSaW 373
                      L++vSaW
  OMERI05G18690.1 472 LYAVSAW 478
                      ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.00383459IPR005202Transcription factor GRAS
PfamPF035141.1E-82110478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MQFHDHHQYL YSSSSSSNLP LQQPLLSHHH RFLEANEGCA GEDDAPEFVE PPPPAAAGTF  60
EQRPELGACK EVYSEEGGAA EERTDMAMAG NDVEQVVVED EEEAHGVRMI ALLMECAVAM  120
SVGNLAGANG ALLELSQMAS PYAPSCGERL VAYFARAMAA RLVGSWVGVA APLAPPPPPR  180
AAAINAAFRA LYNVAPFARL AYLACNQAIL EAFHGKRLVH IVDLDVVPGG ALQWLSLLPA  240
LAARPGGPPA IRVTGFGMSA SVLHDAGNQL AGLARKLCMS FEFYAVAKRP GDADAVADVP  300
GRRPGEAVAV HWLRHAMYDA AGDDGTAMRL VRWLEPTAVT LVEQERAHGG DGGHGRFLDR  360
FVSALHHYSA VFDAMGASRP DGEDASRHLA EHGVLGREIA NVLAVGGPAR SSGRERPGSW  420
REVLPRHGFA HAGGGGGGRA QLVAAACPGG LGYTVAGDHD GTVRLGWKGT PLYAVSAWAW  480
CSPPHARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-89944793378Protein SCARECROW
5b3h_D2e-89944793378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939520.0AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence.
GenBankAC1182890.0AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638651.10.0protein SCARECROW
TrEMBLA0A0E0DT740.0A0A0E0DT74_9ORYZ; Uncharacterized protein
STRINGOMERI05G17800.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-62GRAS family protein