PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G17500.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 264aa    MW: 27983.5 Da    PI: 5.4496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G17500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1867115355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+Wv+eIr+p   + r kr++lg+fg+a +Aa a+++a+ ++ g
  OMERI05G17500.2  67 YRGVRQRR-WGKWVSEIREP---N-RgKRHWLGTFGSAVDAALAYDKAAASILG 115
                      9****998.**********8...3.35**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.10166123IPR001471AP2/ERF domain
SMARTSM003807.5E-3466129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2966124IPR001471AP2/ERF domain
CDDcd000184.73E-1967124No hitNo description
SuperFamilySSF541712.81E-2067123IPR016177DNA-binding domain
PfamPF008471.4E-1167114IPR001471AP2/ERF domain
PRINTSPR003673.3E-116778IPR001471AP2/ERF domain
PRINTSPR003673.3E-11105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKKQARAKN GDTPEPDAAG GARARASRRA  60
KRGPGSYRGV RQRRWGKWVS EIREPNRGKR HWLGTFGSAV DAALAYDKAA ASILGPRAVL  120
NFPAFSPPAA TIAAPEQREP PFCSPATTAA AAAATAHEQR QTPCCSPAAV AGSGGGAVFE  180
ERDVKPVVLP LPLPAILQGG GGTEAMAQHW DWEWDASRPE LEMFECLDDI AMYLDVDAVM  240
TTRDCKVEEL DADIVDSPLW TLSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1666123260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1667123663ATERF1
3gcc_A1e-1667123663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025590.0AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638470.11e-121dehydration-responsive element-binding protein 2D
RefseqXP_015638471.11e-121dehydration-responsive element-binding protein 2D
SwissprotQ65WX11e-122DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0E0DST80.0A0A0E0DST8_9ORYZ; Uncharacterized protein
STRINGOMERI05G16600.30.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-16DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]