PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G16730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 155aa MW: 17498.8 Da PI: 9.5546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+ + Rt+ qc +rwqk+l OMERI05G16730.1 59 KGGWTPEEDEKLRKAVDIYNGKNWKKIAESFS-DRTEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.7e-17 | 111 | 154 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT+eEd+ +++ vk++G++ W+ Iar ++ gR +kqc++r++ OMERI05G16730.1 111 KGPWTQEEDDVIINMVKKHGPKKWSVIARSLN-GRIGKQCRERYL 154 79******************************.**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.294 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-15 | 56 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 61 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-13 | 62 | 105 | No hit | No description |
SuperFamily | SSF46689 | 1.38E-23 | 90 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.29 | 106 | 155 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-8 | 110 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 111 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 113 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.20E-13 | 113 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGAMPAVKVE EEEEEERNPV ASSPSVSEGS AHAAALASPT AADSIFGRRR KSGPVRRAKG 60 GWTPEEDEKL RKAVDIYNGK NWKKIAESFS DRTEVQCLHR WQKVLDPELI KGPWTQEEDD 120 VIINMVKKHG PKKWSVIARS LNGRIGKQCR ERYLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-38 | 1 | 153 | 1 | 142 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-38 | 1 | 153 | 1 | 142 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106756 | 1e-127 | AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637435.1 | 6e-89 | transcription factor MYB3R-2-like | ||||
Swissprot | Q0JHU7 | 4e-60 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0E0DSG7 | 1e-110 | A0A0E0DSG7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G15840.1 | 1e-108 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 3e-56 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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