PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G15970.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 381aa    MW: 41407.1 Da    PI: 5.9415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G15970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-06214233120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  OMERI05G15970.1 214 FVCHVCNKAFNRYNNMQMHM 233
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-5210237No hitNo description
PROSITE profilePS5015710.388214241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-5214233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
PROSITE profilePS508688.135259275IPR003616Post-SET domain
SuperFamilySSF576676.8E-5285321No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4288321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVLRACTMVE GSSFVGGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGTG  60
AGTMLCLPLL GRLGEEPVAD ADDGGAMNNP PVKEEVSNTT DDYAGVDLNI GLPATGGCSS  120
EDAPMDEDEE DDDDDDEEEE TEDDEEKAAG HEGCKVEEEE REQVHSEGSK YYVSVGGGED  180
QSSNAGDVDA AGDCRGRRYW IPTPAQILIG PVQFVCHVCN KAFNRYNNMQ MHMWGHGREY  240
RKGPESLKGT QATATLAMLK LPCYCCAAGC RNNVGHPRAR PLKDFRTLQT HYKRKHGAKP  300
FACRRCAKPF AVKGDWRTHE KNCGKRWFCA CGSDFKHKRS LNDHVRSFGG AAAAPPLPKQ  360
QQRIIRFDDA MAPMHGSGLM N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.10.0protein TRANSPARENT TESTA 1 isoform X1
TrEMBLA0A0E0DS450.0A0A0E0DS45_9ORYZ; Uncharacterized protein
STRINGOMERI05G15200.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-92C2H2 family protein