PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G15750.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 568aa MW: 62466.3 Da PI: 7.0922

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G15750.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	258	287	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OMERI05G15750.2 258 AKTERRLAQNREAARKSRLRKKAYVQQLET 287 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	255	331	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	257	301	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	258	288	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-6	259	302	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-7	259	288	No hit	No description
PROSITE pattern	PS00036	0	262	277	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.7E-29	340	414	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MGLRCLLLQT RPAYWPKGLY LNASSPAATR IVAGGTPAAA TTEKRGENHT LNTRPLPPLA 60 ATESTARLLS STAGGIRLHR SHGKPKDSAN LRRPHESGAF QELQPAAAAY FGELEKALIH 120 GTSAGAGVDH GMIQSDAYTE SAGYLAARPP TLEIFPSWPM SHLQEPYSNS QSVGSTTDSS 180 SAQNTMSQAE LVSPASMRSD SGQEQQQQEV LMVTIDDYNY KQGLGAAIAT APSFQQHAGG 240 LDMRKHGSTR KDGKLLDAKT ERRLAQNREA ARKSRLRKKA YVQQLETSRI RLQQIEQELQ 300 RARSQGLFPG GCSAPGDMSS GAVMFDMEYT RWIDDDSKCM AELQGALQAQ LPDGNLGAIV 360 EECMRHYDEL FHLRAVLASS DVFHLMTGMW AAPAERCFLW MAGFRPSEIL KMLIPQLDPL 420 TEQQLMGMCS LQQSSEQTEE ALAQGLHQLH QSLADAVGGG PLNDGADVAN YTGLMALALG 480 RLENLESFYR QADNLRQETL HHMRRILTTR QTARCFLSIG EYNRRLRALS SLWASRPREN 540 FIATENVSPT GTEFQVIQQS QQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MGLRCLLLQT RPAYWPKGLY LNASSPAATR IVAGGTPAAA TTEKRGENHT LNTRPLPPLA  60
ATESTARLLS STAGGIRLHR SHGKPKDSAN LRRPHESGAF QELQPAAAAY FGELEKALIH  120
GTSAGAGVDH GMIQSDAYTE SAGYLAARPP TLEIFPSWPM SHLQEPYSNS QSVGSTTDSS  180
SAQNTMSQAE LVSPASMRSD SGQEQQQQEV LMVTIDDYNY KQGLGAAIAT APSFQQHAGG  240
LDMRKHGSTR KDGKLLDAKT ERRLAQNREA ARKSRLRKKA YVQQLETSRI RLQQIEQELQ  300
RARSQGLFPG GCSAPGDMSS GAVMFDMEYT RWIDDDSKCM AELQGALQAQ LPDGNLGAIV  360
EECMRHYDEL FHLRAVLASS DVFHLMTGMW AAPAERCFLW MAGFRPSEIL KMLIPQLDPL  420
TEQQLMGMCS LQQSSEQTEE ALAQGLHQLH QSLADAVGGG PLNDGADVAN YTGLMALALG  480
RLENLESFYR QADNLRQETL HHMRRILTTR QTARCFLSIG EYNRRLRALS SLWASRPREN  540
FIATENVSPT GTEFQVIQQS QQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639063.2	0.0	transcription factor TGAL5 isoform X7
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0E0DS07	0.0	A0A0E0DS07_9ORYZ; Uncharacterized protein
STRING	OMERI05G15000.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-137	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]