PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G15750.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 571aa MW: 62939.1 Da PI: 7.6173

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G15750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	261	290	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OMERI05G15750.1 261 AKTERRLAQNREAARKSRLRKKAYVQQLET 290 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	258	334	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	260	304	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	261	291	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.11E-20	262	314	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.0E-7	262	291	No hit	No description
SuperFamily	SSF57959	1.61E-6	262	305	No hit	No description
PROSITE pattern	PS00036	0	265	280	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.8E-29	343	417	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MGLRCLLLQT RPAYWPKGLY LNASSPAATR IVAGGTPAAA TTEKRGENHT LNTRPLPPLA 60 ATESTARLLS STAGGIRLHR SHGKMKLQGG FDLPVWEKTN RKRSNILSCA AAYFGELEKA 120 LIHGTSAGAG VDHGMIQSDA YTESAGYLAA RPPTLEIFPS WPMSHLQEPY SNSQSVGSTT 180 DSSSAQNTMS QAELVSPASM RSDSGQEQQQ QEVLMVTIDD YNYKQGLGAA IATAPSFQQH 240 AGGLDMRKHG STRKDGKLLD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQIEQ 300 ELQRARSQGL FPGGCSAPGD MSSGAVMFDM EYTRWIDDDS KCMAELQGAL QAQLPDGNLG 360 AIVEECMRHY DELFHLRAVL ASSDVFHLMT GMWAAPAERC FLWMAGFRPS EILKMLIPQL 420 DPLTEQQLMG MCSLQQSSEQ TEEALAQGLH QLHQSLADAV GGGPLNDGAD VANYTGLMAL 480 ALGRLENLES FYRQADNLRQ ETLHHMRRIL TTRQTARCFL SIGEYNRRLR ALSSLWASRP 540 RENFIATENV SPTGTEFQVI QQSQQNQFSG F

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MGLRCLLLQT RPAYWPKGLY LNASSPAATR IVAGGTPAAA TTEKRGENHT LNTRPLPPLA  60
ATESTARLLS STAGGIRLHR SHGKMKLQGG FDLPVWEKTN RKRSNILSCA AAYFGELEKA  120
LIHGTSAGAG VDHGMIQSDA YTESAGYLAA RPPTLEIFPS WPMSHLQEPY SNSQSVGSTT  180
DSSSAQNTMS QAELVSPASM RSDSGQEQQQ QEVLMVTIDD YNYKQGLGAA IATAPSFQQH  240
AGGLDMRKHG STRKDGKLLD AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQIEQ  300
ELQRARSQGL FPGGCSAPGD MSSGAVMFDM EYTRWIDDDS KCMAELQGAL QAQLPDGNLG  360
AIVEECMRHY DELFHLRAVL ASSDVFHLMT GMWAAPAERC FLWMAGFRPS EILKMLIPQL  420
DPLTEQQLMG MCSLQQSSEQ TEEALAQGLH QLHQSLADAV GGGPLNDGAD VANYTGLMAL  480
ALGRLENLES FYRQADNLRQ ETLHHMRRIL TTRQTARCFL SIGEYNRRLR ALSSLWASRP  540
RENFIATENV SPTGTEFQVI QQSQQNQFSG F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639066.1	0.0	transcription factor TGAL5 isoform X10
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0E0DS06	0.0	A0A0E0DS06_9ORYZ; Uncharacterized protein
STRING	OMERI05G15000.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]