PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G15710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 33629.1 Da PI: 6.5098 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.8 | 4.2e-40 | 4 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk...................................kvkaeeke 57 lppG+rF Pt+eelv++yL++k++g + ++e+vi+ +d+++++Pw+Lp + +++ + OMERI05G15710.1 4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADVCSLDPWQLPGtsssssslqlivftpcvcramrvraaanggqahqgAWTGDGEP 97 79***********************9988788889***************5589******************9999988887655544447789 PP NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 w++F++r++++a+g r++r+t sgyWka g+ v+s++g+ +g+kkt+vfy+grap g kt+W m+eyr+ OMERI05G15710.1 98 WFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWVYSSDGHPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 168 *********************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-17 | 3 | 69 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.813 | 4 | 201 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-23 | 5 | 167 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-28 | 92 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADVCSLDPW QLPGTSSSSS 60 SLQLIVFTPC VCRAMRVRAA ANGGQAHQGA WTGDGEPWFY FCPRQEREAR GGRPSRTTPS 120 GYWKAAGTPG WVYSSDGHPI GTKKTMVFYR GRAPAGAKTK WKMNEYRAFE EDDDNAAAAA 180 PAPNHYLQTR SEFSLCRLYT RSGCPRQFDR RPPSSSVAGG GGENRAAPSS TAAAFANEDD 240 AEASGKGQKR KRSTPDDRLD STSSSDDNGG CDGSMLQQQQ QRQRGTDEEL VECSMTDWAD 300 LLDWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-27 | 4 | 201 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-27 | 4 | 201 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-27 | 4 | 201 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-27 | 4 | 201 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-27 | 4 | 201 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-27 | 4 | 201 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-27 | 4 | 201 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063703 | 0.0 | AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence. | |||
GenBank | JN185442 | 0.0 | JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638341.1 | 1e-162 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-59 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0E0DRZ9 | 0.0 | A0A0E0DRZ9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G14920.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-58 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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