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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMERI05G14780.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 193aa MW: 22328.4 Da PI: 8.7067 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 86 | 2.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtfskRr+gilKKA E+ vLCdaev v+ifss gkl +y++
OMERI05G14780.2 9 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 59
79***********************************************96 PP
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| 2 | K-box | 22.9 | 3.5e-09 | 94 | 150 | 41 | 97 |
K-box 41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
edL+sL+ keL +e++L+++ + R+k +++++++ ++ ++ e+e++ + +++
OMERI05G14780.2 94 EDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAFRVHQQ 150
89**************************99888888888888888877776666665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 3.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.33E-32 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.48E-41 | 2 | 80 | No hit | No description |
| PRINTS | PR00404 | 7.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 7.506 | 66 | 153 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 3.8E-6 | 94 | 147 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 193 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRAGILK KAREIGVLCD AEVGVVIFSS AGKLSDYCTP 60 KTTLSRILEK YQTNSGKILW DEKHKSLSAE IDREDLNSLQ PKELIAIEEA LNNGQANLRD 120 KMMDHWRMHK RNEKMLEDEH KMLAFRVHQQ EVELSGGIRE LELGYHHDDR DFAASMPFTF 180 RVQPSHPNLQ QEK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-18 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK100233 | 1e-160 | AK100233.1 Oryza sativa Japonica Group cDNA clone:J023051B10, full insert sequence. | |||
| GenBank | RICOSMAA | 1e-160 | L37527.1 Oryza sativa MADS box protein (MADS4) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015640709.1 | 1e-139 | MADS-box transcription factor 4 isoform X2 | ||||
| Swissprot | Q40703 | 1e-137 | MADS4_ORYSJ; MADS-box transcription factor 4 | ||||
| TrEMBL | A0A0E0DRK5 | 1e-142 | A0A0E0DRK5_9ORYZ; Uncharacterized protein | ||||
| STRING | OBART05G17040.1 | 1e-138 | (Oryza barthii) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G20240.1 | 1e-59 | MIKC_MADS family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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