PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G14660.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 151aa    MW: 16035.8 Da    PI: 7.513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G14660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-151761250
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                     +y+GVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aar
  OMERI05G14660.1 17 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAR 61
                     59****777.**********943...5*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-91761IPR001471AP2/ERF domain
SMARTSM003801.8E-181777IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-151763IPR016177DNA-binding domain
PROSITE profilePS5103218.611778IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-211764IPR001471AP2/ERF domain
PRINTSPR003672.5E-91829IPR001471AP2/ERF domain
PRINTSPR003672.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGRVAASGGG GGGEMMRYRG VRRRRWGKWV SEIRVPGTRE RLWLGSYATA EAAAVAHDAA  60
RVASDAGMAA DAQLVDLRRD HPPAAAAAAA SYSGSGVAGD GARKQGTRGV ASETYWCRNG  120
EDGSRRSWSS GSDQELIVYE DLSVDDMEIL M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248366e-92AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376236e-92AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149616e-92AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970828.12e-28ethylene-responsive transcription factor ERF020
TrEMBLA0A0E0DRI91e-100A0A0E0DRI9_9ORYZ; Uncharacterized protein
STRINGOMERI05G13900.11e-52(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-07ERF family protein