PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G14410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 311aa    MW: 34282.6 Da    PI: 4.6932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G14410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.17.6e-45101381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp GfrFhPtdeelv +yL+++++g ++++  +i +v+iy+++Pw+Lp+++  +e+ewyfF+ rd++y+++ r++r ++sg+Wkatg+dk+v +
  OMERI05G14410.1  10 LPTGFRFHPTDEELVINYLQRHATGLSCHI-PIIVDVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRLAASGFWKATGTDKPVQV 102
                      699*************************99.88***************76667999********************99**************99 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++ + +kk Lvfy gr p  +kt+W+mheyrl
  OMERI05G14410.1 103 AnmQSTPIAMKKALVFYVGRPPMETKTTWIMHEYRL 138
                      8667777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-553173IPR003441NAC domain
PROSITE profilePS5100551.28510173IPR003441NAC domain
PfamPF023653.0E-2311138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAMQLSLPVL PTGFRFHPTD EELVINYLQR HATGLSCHIP IIVDVEIYNF NPWELPSMAL  60
FGEHEWYFFT LRDHRYPNSV RPSRLAASGF WKATGTDKPV QVANMQSTPI AMKKALVFYV  120
GRPPMETKTT WIMHEYRLTN TRGSTASHPS LSSSTAHPSV KLDEWVLCKI FNKSPEPDNT  180
APPSNVVSRL QCSPPLPPPA APPGNYPPLP VGSTNDGGVF TGAGDMLFTI QEHQEGTPSM  240
LPPIPNLEPP AATIGNSSLN DTAAAAAAAT DGHGRLEEED TSAYTFTDQE MEQMLMDLMD  300
QDFFGNDQPQ E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-5811734165NO APICAL MERISTEM PROTEIN
1ut4_B9e-5811734165NO APICAL MERISTEM PROTEIN
1ut7_A9e-5811734165NO APICAL MERISTEM PROTEIN
1ut7_B9e-5811734165NO APICAL MERISTEM PROTEIN
3swm_A1e-5711737168NAC domain-containing protein 19
3swm_B1e-5711737168NAC domain-containing protein 19
3swm_C1e-5711737168NAC domain-containing protein 19
3swm_D1e-5711737168NAC domain-containing protein 19
3swp_A1e-5711737168NAC domain-containing protein 19
3swp_B1e-5711737168NAC domain-containing protein 19
3swp_C1e-5711737168NAC domain-containing protein 19
3swp_D1e-5711737168NAC domain-containing protein 19
4dul_A9e-5811734165NAC domain-containing protein 19
4dul_B9e-5811734165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073300.0AK107330.1 Oryza sativa Japonica Group cDNA clone:002-126-F03, full insert sequence.
GenBankEU8469990.0EU846999.1 Oryza sativa Japonica Group clone KCS021f05 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638459.10.0NAC transcription factor 25
SwissprotQ8GY426e-65NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0E0DRE80.0A0A0E0DRE8_9ORYZ; Uncharacterized protein
STRINGORGLA05G0143100.10.0(Oryza glaberrima)
STRINGOBART05G16540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162071212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-62NAC domain containing protein 25