PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G13210.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 312aa    MW: 31420.8 Da    PI: 8.4997
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G13210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.71.8e-69852503154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkls 92 
                      sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + aass  ++sa    ++a++k++r l s++++++s+t++s
  OMERI05G13210.1  85 SGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAfpatTTASAKKPRLLGSQTTTTTSRTSTS 178
                      7889*************************************************9999999999889998999999****99************* PP

           DUF702  93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +a+++++++tss          lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
  OMERI05G13210.1 179 NATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 250
                      **********999********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-6187249IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.4E-2789131IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-25201247IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVLVAPAASY HHHRAAAAAA AAAAAEPVFP LLGTGQCALD ADTAKSSGAA AAAGPTTAAG  60
AGGGSADKKP LPMLDYGGIG GPGGSGAATC HDCGNQAKKD CVHHRCRTCC KSRGFDCPTH  120
VRSTWVPAAR RRERQQLAGA ASSPPTSSAF PATTTASAKK PRLLGSQTTT TTSRTSTSNA  180
TTPRSFDTSS SHQVASFRDA LPRHVRAPAV FRCVRVTSVD DGDDEFAYQA AVTINGHMFR  240
GFLYDQGADD GRGGMASTSN DESSHAGAAA AVPSISDLHL GSASAAVPPH LYSGGSGGPL  300
ILGGLGYGNT MN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047100.0AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAC1362190.0AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881073.11e-159protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK97e-60LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0E0DQZ60.0A0A0E0DQZ6_9ORYZ; Uncharacterized protein
STRINGORUFI05G15960.11e-159(Oryza rufipogon)
STRINGORGLA05G0127300.11e-159(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-54Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]