PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G05910.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 391aa    MW: 40737.5 Da    PI: 5.0673
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G05910.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-0565103537
         zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       C+ +e  e++  C  ++  lC+ C    H        H
  OMERI05G05910.2  65 LCSACEAAEASVLCCADEAALCARCDRDVHAAnrlagkH 103
                      7******99*****************9999544455555 PP
2zf-B_box315.3e-10126166337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  OMERI05G05910.2 126 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 166
                      789******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.28161108IPR000315B-box-type zinc finger
SMARTSM003361.3E-961108IPR000315B-box-type zinc finger
CDDcd000211.10E-46596No hitNo description
SuperFamilySSF578457.32E-5121164No hitNo description
SMARTSM003361.4E-15124171IPR000315B-box-type zinc finger
PfamPF006431.5E-8126158IPR000315B-box-type zinc finger
CDDcd000211.50E-8128171No hitNo description
PROSITE profilePS501199.542129171IPR000315B-box-type zinc finger
SuperFamilySSF1014473.92E-5190200No hitNo description
SuperFamilySSF1014473.92E-5357363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAAGDVVPPP PRPRIHSIPF SIAPHPCRLL HHITTTSSSS APRPPPLEEE LRVLAAAELA  60
RMKLLCSACE AAEASVLCCA DEAALCARCD RDVHAANRLA GKHLRLPLLS PASSSAAALA  120
PPPPSPPKCD ICQESHAYFF CLEDRALLCR SCDVAVHTAN AFVSAHRRFL LTGVQVGQEQ  180
DEHSPDPPEP SPPPPPPPPP AKSDHPAPLY GEGGGGFSWD AADSPAAGGL PDWSAVDDQF  240
GSPAPPRHTD TATVTTPPPT KRSPRAPAFG GQGGMMDWPL GEFFGGFTDF TGGFGFGFGD  300
SGTSKADSGK LGGSMDGSPY YRSSSEDDRN ADELFGQVPE IQWSVPELPS PPTASGLHWQ  360
RRPAAAHGGG GGGGPDTTAF VPDICSPDSC C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.11e-171B-box zinc finger protein 22
TrEMBLA0A0E0DN660.0A0A0E0DN66_9ORYZ; Uncharacterized protein
STRINGOMERI05G05700.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-41light-regulated zinc finger protein 1