PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G04320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 246aa MW: 26566.3 Da PI: 8.6467 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+e+++da ++G + Wk+I + ++t+ q++s+ qk+ OMERI05G04320.1 25 RERWSAEEHERFLDALILFGRD-WKRIEGFVA-TKTAIQIRSHAQKH 69 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-15 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.744 | 20 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.6E-15 | 24 | 72 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.1E-10 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-10 | 25 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 25 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-8 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAAMAAAAAG TKKKARKPYT ITRPRERWSA EEHERFLDAL ILFGRDWKRI EGFVATKTAI 60 QIRSHAQKHF LKARKFGLAG GLPPPLHPRR AALLRANAAA ADIMPPTWQP SAGGGSVGCS 120 APPSGLQQGM SGWSPACYSP ESASFRSLIH SNDDDCSFIG TANCIGSGGD SWIGDDAFFM 180 QDETILLPIS PDDLGFAQVY KFVGDMFGSG ERRPVEAHLR RLQGMDPAIS ETILLVLKNL 240 EANLSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124144 | 1e-108 | AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence. | |||
GenBank | AP014961 | 1e-108 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-108 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638954.1 | 1e-160 | protein REVEILLE 8 | ||||
TrEMBL | A0A0E0DMH7 | 0.0 | A0A0E0DMH7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G04180.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 9e-28 | MYB_related family protein |